RNA id: XM_015605785.2


Basic Information

Item Value
RNA id XM_015605785.2
length 2394
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC103021723
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15321270 ~ 15331330 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacgcgcacgctCGCACTTCACCACATGCCCTCGCATACCCCTTCCGTCTCGCTGGGGGTGGAGGGGGCGCGCGAGTGACTGGAGAGATGAGATCGGGGATTTAGGAGAGCATAAAATTACATCCACACGTGCAGCTCAGCGTTACGTAATAGCGCCTGCCAGCCTGCTGCCCTCGCGAGCGCGCGGAGGAGCGAGCACGAGCAGAACCGGAGCCTCAGCAACAGAAACACCCGCCCAGACATCCTCAGCGCGAGCATGCGGACACTTCGGGCTCTCCGCGGAGCCTCGGGATTCTCCACGGATTCTCTTCAGGCTGAGAGCACTGGGAGACCACCTCACTGAGCCGTCCTGCCTGCCTCACCTGATCCGCCTCACCTGATCCAGCTCACCTGGAGGCTCTCTGACTCCTCCGCTGCGGGGATGCTAATGCCAGCGCTGCTGAGGCTGAGATATGTGTAGGCTGCTGTGCGGATTATTATTACCCTAACTCCTACAGGACTCATCTGCCCCTCGGCCGGGCTGCGCGTGAGTGTGGGTGGCGCCCCCCTGAGGCCGTGGCAGGATGCGGTCCGCGTGGCCGCtggtgtgggcagtgtgtgggCTGAGCGCGGGGGCTCCCCCTGCCCACGGAGCATCAGTCAGCCCCATCCTGCTCGTGAGCACCGTGGCCACGCCCACCGAGGATCAgaccacgcccacagagtctcTTAACAACAATGACACAGGTGGCTTGAGCTGTGTGTCTCTGCTCCCCCCACGGAGAGGGTCCTACTATGTGGAGCAGGGCACTGGGGTGTCTGTAGGCTCTATCCTGGTGTTCTGGTGTCGGGAGGGATACCAGCTGGTGGGCAGTGAGAAGATCACCTGCATGGTCCGTGCAGGTGTTCCACGCTGGAGTAATTACCTGCCTGTTTGTGAGAGCATCCCAAAGCCAGATGACCAGGGCTTGCGTATGGCATTGCTGGTGTCTGTGGTCAGTGGTGTGGTCATTCTAGTCATGACGGTTTCGTTTATTGTGTGCTGTATCCAGGAGCACATGAGCAAAAAGAAGGAGAAGCACCGGTCAGGCAGGAGCAGGAGAAGAGAAAAACGCCATTCGAGATCCAGAAGAAGCCCATCCTGGTTAGTCCGGGAGGAGCTGGACTGGGAAGCTTTCCCACCTCCGAAAATCTTCAATGTGTCTCAGCGTTTTGAGCGAACAGCACCTGCTGGTAGCCCTCTTTACCCTGGGGTCACAAGAGGCTACGAAAACAGAGGGTACGAGAGGAGTCAGGAGAGCCTGCTGAGGAGCCCTCACCCTGGAGTCTACCACACAGACAGCCAGGTCTACCCCCATCTGGTGCTCCAGAGGGTACAAACAGCTCCAAACCCTCAGGCCAGCCCCACAACGCCAGTCTACCTGCACATCTCCACTCCTCCCAATGCGGCCAAAGCTCAGCGCCGCCCTCCTGTCACCCTCCCATAGACTGATAATGACTCTGCCACAATCAAATCACCCAAATGACTGCCCACACTGGATGTGGCCATGCCAAGTCTACCTAGAAAGCAAGGAGAGGATGAGAGAATTTCCTTAGAGACTAAATGGTCTTTGTGACCAGGTGAAgcactttgttttatttttttttttacagtaaaccaCTAAAAACTCttctaaatgtaaattattttcagttagatttacaataaatattatatatagtatatgtaaatatatatatatcccattTGGGGTGCCTGCTTAATGTGCATTTCTTGATGGAATATTTCAGTGCAATATCTTAAACTCCTTATCTCCCTGTCTTTTATTACATCATAAGGATTACTATAATTCAGTAACTACATGGACAGGAATGCAATGTTGCTAAGTGAGAAACAAAAGCCAGGAATCACAGGTGGTTCTGCAAAGTTTACGAGGTTAAGCTGCCAACCGACTGTAAATACAGCCAAAAACTGTAAATACAACTTTATTGTGCTAAGAATTTTAAGGATGCTCCTTATTTAGGACCGACAACTTAATATAGAGTCCAATATATTTTAGATGAACAGTTATTAACTACCTACCTTTGGTCAGTTCTGTGTTTCGTCTGAACTGTGGTCGGAcactgaatttgttttcttagcTCACTTATTGATGTGAAAGTGTTTGTTGTGGACTGCTGACCAAAattgtattctataaaaaatGACCCACTTCAACAAAAATTAAGCTTTACATTTTGTAGTGAtgtggtttttaataaagtgataTTGTTGTCCACATATTTGTTACGGTGCTGCTAATACTTAATTCACTTTAAAGCTCTCTCAATAAACAAATGAGCACTTTTATGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214828 lncRNA upstream 1585 15315957 ~ 15319685 (+) True G158477
TU214824 lncRNA upstream 5718 15312020 ~ 15315552 (+) False c18h11orf16
TU214823 lncRNA upstream 15807 15304809 ~ 15305463 (+) True G158475
TU214803 lncRNA upstream 25878 15291441 ~ 15295392 (+) True G158461
TU214819 lncRNA upstream 30543 15289145 ~ 15290727 (+) False G158472
TU214842 lncRNA downstream 32427 15363757 ~ 15367122 (+) True G158486
TU214935 lncRNA downstream 60329 15391659 ~ 15393165 (+) True G158555
TU214946 lncRNA downstream 120886 15452216 ~ 15460270 (+) True G158565
TU214947 lncRNA downstream 120886 15452216 ~ 15455805 (+) False G158565
TU214948 lncRNA downstream 124843 15456173 ~ 15461006 (+) False G158565
XM_007249221.3 mRNA upstream 9221 15306212 ~ 15312049 (+) True c18h11orf16
XM_007249226.3 mRNA upstream 17259 15298945 ~ 15304011 (+) True nrip3
XM_007249238.3 mRNA upstream 165661 15150051 ~ 15155609 (+) True rnf141
XM_007249239.2 mRNA upstream 165661 15151779 ~ 15155609 (+) False rnf141
XM_007249235.3 mRNA upstream 172635 15144072 ~ 15148635 (+) False LOC103024643
XM_022679422.1 mRNA downstream 2543 15333873 ~ 15335002 (+) True LOC111194727
XM_007249220.3 mRNA downstream 11164 15342494 ~ 15347109 (+) True LOC103046975
XM_007249216.3 mRNA downstream 42019 15373349 ~ 15376164 (+) True chtf8
XM_022679655.1 mRNA downstream 151114 15482444 ~ 15501213 (+) True LOC103031192
XM_007249208.2 mRNA downstream 347393 15678723 ~ 15688714 (+) True LOC103043506
TU214761 other upstream 185072 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 185072 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 185072 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 270552 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 1585168 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 1047929 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 1432196 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 1846345 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 1846345 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 3195056 18526386 ~ 18576437 (+) True necab2

Expression Profile