RNA id: XM_007249235.3


Basic Information

Item Value
RNA id XM_007249235.3
length 1463
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC103024643
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15144072 ~ 15148635 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cggttttattgttttcttcttttgccCTTTGCTCTGTGGGTCCATGGCCTCGAACAGAAGGTCTTTTAACAGATCATCCTCAACCTCCTGTTTCCCATTTCCCTCTGTCATTAGCTACGCTAGAGCACACCATGCAAACAAGACTTTAGTGTAGGAGCAATGAAGTCTAGAGTGGGTTTAACTCTGTGCTGtcttctctttctgctgcatTTCACAGTCAGTCTAGATCTCAGCCAGATTGAAGTTTACCCTGAAAATGGTGGAATCTCTGGAGTATTTATGGCCATGCTGAAGAAAAAATCAAACAGCTTCAATGCCACTACAGCCAGTGAGGTGTGCAGGTCTCTCAGTGTTAGAATAGCTACCAAAACTGAAGTGGAATCTGCACTGGCTGCCGGCTTAGAGACGTGCAGGTTTGGTTGGGTTGAGGAGAATATTGCGGTCGTTCCTCGAATAAACCCACATGAAAAGTGTGGCAAAAGCAAAGTTGGAATTGTTACTTGGTCTACTCCTCTAAGCAGGTTGTTTGATGTGTTTTGCTTCAATTCAACagGTCAAACCAAAGCAACAACAGCCACTACTCCAACAACGACAAACCCAATTAACACAAGTCCTCAAGCTAATTCAACCCCCCCACGGCCCATTCACTCTACAGCATCTAACAAAAActtcctctctctgtcctctcctGCCTCTTCCACATCCTCAACTTTCAGCACCTCTATGTCCTCCACATTCTTTCCCACTGTTGCAGCCACAAGAATCCCTCCATCACTGTCACTCTCAACTACTCAATCTCCACTCGCTACTTCCTCCTCTAATTCTACTGCATCCCTCTCTTCTATCAGTCTGTCCACACATCCGCTCACCTATACTTCCTCTTTAAGCAGCCAGTCTAATCAAACAGGACCGCTCGCACCGGACACGCCCACATCATCCTTTGGAGaGGTTCCAACAGCATGTGTTATCATTGCTGTCATGCTCATCTTGATGGCGGCAGCAGTAAACAAACACACCGTTTTCCACCATGGGTCAGACTCCGACACAAAGACATGGTTGAAACTGAGATGTGGAAGCACACAGAGCAGCAGTGTTCCAGCAAATATAAGGGGAAAAGCAGCTCTACAGGTGATATATCTCTCCTGCTGGAAGAAGACACAGAATCACCCAGTGTCCAGTGTCCTTCATGAGGGTGCTCAAGCAGTCAGTAAACATTTTTGGAGCTATTGGGGATTTGAAAGACTGTAAATATGCTGCTTGATATTTTTTAGAAAGATGCTTTGTATTATAGATGAGGGTGGTTCAGGTATCTGGAATAAAACAGTGGTAATAATGAATTTGGATGTTTTTACTGGGCATCATCAATGACAATTTCATACctgtgacaaaaaatatatatattggtagAATTGTACTACTGTAATatgaattaatgaaaaaataaacactacatTGTGAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214769 lncRNA upstream 1600 15142172 ~ 15142472 (+) True G158429
TU214757 lncRNA upstream 19078 15124789 ~ 15124994 (+) True G158419
TU214755 lncRNA upstream 20403 15123138 ~ 15123669 (+) True G158417
TU214719 lncRNA upstream 73663 15069786 ~ 15070409 (+) True G158381
TU214697 lncRNA upstream 135989 15007505 ~ 15008083 (+) True G158359
XR_001518679.2 lncRNA downstream 54549 15203184 ~ 15213993 (+) True LOC107197619
TU214791 lncRNA downstream 98984 15247619 ~ 15249375 (+) True G158449
TU214811 lncRNA downstream 128988 15277623 ~ 15280021 (+) True G158467
TU214817 lncRNA downstream 136269 15284904 ~ 15289711 (+) True G158472
TU214819 lncRNA downstream 140510 15289145 ~ 15290727 (+) False G158472
XM_022679650.1 mRNA upstream 6802 15133981 ~ 15137270 (+) True LOC111194769
XM_022679651.1 mRNA upstream 6802 15133982 ~ 15137270 (+) False LOC111194769
XM_022679652.1 mRNA upstream 6802 15133983 ~ 15137270 (+) False LOC111194769
XM_007249257.2 mRNA upstream 23767 15107363 ~ 15120305 (+) True LOC103031502
XM_022679648.1 mRNA upstream 313728 14818068 ~ 14830344 (+) True LOC103031823
XM_007249238.3 mRNA downstream 1416 15150051 ~ 15155609 (+) True rnf141
XM_007249239.2 mRNA downstream 3144 15151779 ~ 15155609 (+) False rnf141
XM_007249226.3 mRNA downstream 150310 15298945 ~ 15304011 (+) True nrip3
XM_007249221.3 mRNA downstream 157577 15306212 ~ 15312049 (+) True c18h11orf16
XM_015605785.2 mRNA downstream 172635 15321270 ~ 15331330 (+) True LOC103021723
TU214761 other upstream 7874 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 7874 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 7874 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 93354 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 1407970 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 1230624 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 1614891 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 2029040 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 2029040 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 3377751 18526386 ~ 18576437 (+) True necab2

Expression Profile