RNA id: XM_007249238.3


Basic Information

Item Value
RNA id XM_007249238.3
length 2424
RNA type mRNA
GC content 0.39
exon number 6
gene id rnf141
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15150051 ~ 15155609 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGCTTATGAAGTAGTCAGCTCGGTGGCTAAGCTAACGGTACACTGCGCTCGTCTGAGAGCGGTTTTACTTCCAGTGCTTTTATTGGATATCTCTCTCATGTCAGCAGGGCGTTGTGTGCTGAATGAGCTCTAGTGTTCTCTTCGTGTGGGTCTCCACGTGGAGCTGAGATGGGCCAACAGATCTCTGGCCAGGCGGTGGTGAGCAGGCTTCCTGAGAAGCTGATCAAGCACGCCGGACTAGTGCGGGACAGCGGCTACCTCACCTATGAGGAGTTCTTGGGCCGAGTGGCAGAGCTGAATGAGGTAACTGCAAAGCTGGCTGCTGGCCAACAGAAGCATCTCCTCTTCGAAGTTCAGCCTGGATCTGATGCGTCTGCCCTGTGGAAAGTGGCTGTGAGAATAGTCTGCACTAAGATTAACAAAGAGGATGGGATGGTGGAGGCCTCACGCATTATGAACCTGTACCAGTTTAACCAGCTCTACAAAGACATTACCAGCCAAGCAGCTGAAGTTCTTTCAGGAGAGGGCGCTGCTGAGTGCTCGTCTGGGCAGCTTTCCTCTGCAGAGTCCTGTCAGGCCAGTATGTGGATGGGCAgGGTGAAACAGCTCACAGATGAGGAAGAGTGCTGTATCTGTATGGATGGGAAAGCGGATCTTATTCTGCCGTGTGCTCACAGCTTCTGCCAGAAATGCATTGATAGGTGGAGCGGTCAAAGTCGAAACTGTCCCATCTGCCGGATTCAGGTAACCGCTGCCAATGAATCATGGGTAATGTCTGATGCGCCCACAGAGGAGGATATAGCCGGCTACATTCTCAATCTCGCTGATGAGGCTGGCCATCCTCACAGACCCTAAACTGAACCACTACGTCACTTAATACCTGCTTACTTAAATTATTACACTTATCTTTTGACTGTAAAACAAGCTGTTTTAAATGGTGAGGAGGTGAGAATAGCTTGATCTATTCCTTTATCGCTGGAGGCAATAACCCCTTGTTGTTGTCCTTACTTTTTTGAGTTCTGAAACTGTGAAAAGGCAATACATAGCATTTCACTGAAAACACTGCTGTTTTCTGATTGAccacctgcttttttttttttttttttttttttttttaattcttaacaCATTGCGCTTAAGTAGTAATTTTGTATGAATTAGAAATATCAAACCTTCAGTTTACTTTTCAGGAGAGTTGAGACAAGTGGAGACCACCATTCTTTACATTCAGTGTTTAAATCTTCACAGAGAGAGCTTTGACACAATTTCTGAATACTGAAGTTTCCTCATAACATAGTAGTTTAATGGATTTTGATTAAGTGCTTAAAATGACACTGTTCCTATGGTGTCATTGTGTTGCTACTGAAGTGCAATATTGCTCAAACTGTAATCTGGGCTTTTTCTTATAGTTCAGTTAATACAATAACAattgaaaatgcattttatgaaGAAGCTATGCTGGTTTAATGGTtagtctgtaaaataaaaattggctACTGAGACTATTTTACGAACAGATTATCTGGGCCAGATTCACATAAGCTTTCCTAAGggataaaacatatataaatgcttaaataaacGCTAAGAAGATCATTCTTCAGAAGTTCTGGAATTAAGTCTTAAAAAGTTGTCAAATATTCTTTTAATCTCTCTTAGTTTGTTCAAGGTTTCCTTTAAACAGTAATTTGGGCAGTTTTCCCAGAgaaggattaagcctagttgtagactgttttacttttaatgaaacaattctatttaaattgccgtgtagtccaagactaggcttaatccctgtttgcGGGAAGTGCCCCATAGTAtgttatcattatcatcatcatttattATGCAAGACTTTTTTCATGatctaatatttattaaatcctTGCAAAAtaggaaaaacagaaacagtcctcaatattaattacattaaattagacATTAAAATACTGCAGTCTAGGAAATGTatgagaaaacagaaaaatcttAAGactcaaacaaaaatatatatattgtcatattttttttttctttcttaagaCACTTTTGTGAATTTGGCCATTGGTGATTTTACCTGTATTTATACAGTACTGCACTCACTTTCTGTGGCATTAActtccttttttaaattgttccaTAATTTACAGGTAATTTACAAACAGCTGATcgaatgtttctttttttgggttggatttgttttttttttggtatgtaTGTGTGGCCTGTGTAATAACATTAACTATAATatattaagaataaataaatgtatatttttcttgACATCCTGTTCATAATCTGGTGTTAATCCTGAACTTTGTAAATGTCTAATCACTTGCAGCTCTATAGACTTTTTGATGTTGTTGAACTACTACTTCCACCAAGTTTCAGTGCTCAGCTGAATAAATAAGGTACCACTTTTTGTA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214769 lncRNA upstream 7579 15142172 ~ 15142472 (+) True G158429
TU214757 lncRNA upstream 25057 15124789 ~ 15124994 (+) True G158419
TU214755 lncRNA upstream 26382 15123138 ~ 15123669 (+) True G158417
TU214719 lncRNA upstream 79642 15069786 ~ 15070409 (+) True G158381
TU214697 lncRNA upstream 141968 15007505 ~ 15008083 (+) True G158359
XR_001518679.2 lncRNA downstream 47575 15203184 ~ 15213993 (+) True LOC107197619
TU214791 lncRNA downstream 92010 15247619 ~ 15249375 (+) True G158449
TU214811 lncRNA downstream 122014 15277623 ~ 15280021 (+) True G158467
TU214817 lncRNA downstream 129295 15284904 ~ 15289711 (+) True G158472
TU214819 lncRNA downstream 133536 15289145 ~ 15290727 (+) False G158472
XM_007249235.3 mRNA upstream 1416 15144072 ~ 15148635 (+) False LOC103024643
XM_007249236.3 mRNA upstream 1416 15144074 ~ 15148635 (+) True LOC103024643
XM_022679650.1 mRNA upstream 12781 15133981 ~ 15137270 (+) True LOC111194769
XM_022679651.1 mRNA upstream 12781 15133982 ~ 15137270 (+) False LOC111194769
XM_022679652.1 mRNA upstream 12781 15133983 ~ 15137270 (+) False LOC111194769
XM_007249226.3 mRNA downstream 143336 15298945 ~ 15304011 (+) True nrip3
XM_007249221.3 mRNA downstream 150603 15306212 ~ 15312049 (+) True c18h11orf16
XM_015605785.2 mRNA downstream 165661 15321270 ~ 15331330 (+) True LOC103021723
XM_007249225.3 mRNA downstream 165662 15321271 ~ 15331330 (+) False LOC103021723
XM_022679422.1 mRNA downstream 178264 15333873 ~ 15335002 (+) True LOC111194727
TU214761 other upstream 13853 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 13853 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 13853 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 99333 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 1413949 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 1223650 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 1607917 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 2022066 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 2022066 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 3370777 18526386 ~ 18576437 (+) True necab2

Expression Profile