RNA id: XM_007249249.3


Basic Information

Item Value
RNA id XM_007249249.3
length 1629
RNA type mRNA
GC content 0.51
exon number 4
gene id alx1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14636792 ~ 14643499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTATAAGGTCCCTTTAAGACAAGACTAATGAACCGCGTGCGCAAATCAGCGGGCCACAGCACTgccaaacagacagacagacacctATGGTGTGCTTTAAGGAGcctggagagggagagagacatagagcaagacaggcagagagagagcgagacgaGGTCCGCGgacaatgatgatgatggaatACATGACGGACAAGTTCCCCATGAAGAGTGAAGCGATTAAGGGCAGTGAGTACTACATGGGCTCGGGCAGCACTCTGGAGCAGGTGATGGAGAGCCTGGAGAGTGTGCAGTACTACGACAAGACTTCACCTAAGTGTGTGCACTCTCACTCCTACACCCTGCAGAACAGCGAGCAGCACAGCAGAATGGACAGGGCCTCGCCATGTGACAACCAaagcaATCCCGCGTACCGGGCGGCCGAGGCCGAGGACGAAAGCGCGCGCACCGCCGCCGAAAGCCGCGAGCGCAGCGACGGAGACGAGCTCGCGGAGAAGGCGGACAGTAACGTCACCAGCAGCAAAAAGCGGAGACACCGGACCACCTTCACCAGCGCGCAGCTCGAGGAGCTGGAGAAGGTCTTCCAGAAAACTCACTACCCAGATGTGTACGTGAGAGAACAGCTGGCCATGAGGACAGAGCTGACCGAGGCCAGAGTGCAGGTTTGGTTCCAGAACCGCAGGGCTAAGTGGAGGAAGCGAGAGCGGTACGGACACCTGCAGCAACCCAAAGGCCCTTACAGCAACACATACGAGCTCACAGCCTTACCCAGAACAGACACCTACTCACAGATTCCCAACAACCTGTGGACGGCTCAGTCACCCAGTGGCTCCATGGTGTCGTCCTGCATGATCCCACGAGGTTCCCCTCCTTGTGTGCCCTCCCCGTACCCCCACTCTCCACGAGCTCCAGAGCACGGTTACGTGGGCTTCCCAAACCACCAACAAAACCAGTTTGGCGTCAATCACGTCTCCCTCAACAACTTCTTTGCTGATTCACTCTTGGCTCCAGCACCCAGTGGACATGCAGCATTTGAGAGCAAGCCTGAATTTGAGCGGCGGTCCTCCAGCATCGCTGTCCTGAGGATGAAGGCAAAAGAGCACACGGCTAACATTTCCTGGGCTATGTGAGccactctctcagactcttaCACATAGCAATAATACAAGGAGTTTAACCTTAAAGCATTGATAGGGCTGATGGTCTTGAACTCTTGAATGactgaaatataaaatgatttctTTAAAGAGCTTCAAAATTGCAGACAGCACCATTGTATCATTCCTTCACATGCTGAAATACCGAAATTAGAAGTTGGCTATAGAATAGAAGTTGGTTATAGTTTAAAAAGGAGTCTCTTTAGGAATCAATAGTGTGCCTTGTTATTCCTGATGCACTTACAATGATGTGAAAACAGTGGCACAGGGAGCGTTAGGAGATAAACAGCATTCTGTTCTCAGGACTTAGAGCAGAGGTGATGTCTCTGATATACTAacattttgtttgtgtgctttgaaGCAAAGCTGTGTACAACTCAAACCTGTGGCTGGCTTAAGCTCTGCCACAATCGGAGGATCATTTCATCCTCTGTGATAacattatttgaataaaatttatttcattaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001755 neural crest cell migration biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09334 ALX1, CART1; ALX homeobox protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214518 lncRNA upstream 74661 14560650 ~ 14562131 (+) True G158238
TU214309 lncRNA upstream 446750 14168959 ~ 14190042 (+) True G158093
TU214299 lncRNA upstream 479759 14151418 ~ 14157033 (+) True G158086
TU214298 lncRNA upstream 486303 14149486 ~ 14150489 (+) True G158085
TU214277 lncRNA upstream 519949 14116319 ~ 14116843 (+) True G158068
TU214658 lncRNA downstream 267459 14910958 ~ 14919932 (+) True G158335
TU214690 lncRNA downstream 335244 14978743 ~ 14980092 (+) True G158357
TU214697 lncRNA downstream 364006 15007505 ~ 15008083 (+) True G158359
TU214719 lncRNA downstream 426287 15069786 ~ 15070409 (+) True G158381
TU214755 lncRNA downstream 479639 15123138 ~ 15123669 (+) True G158417
XM_022679646.1 mRNA upstream 4600 14588458 ~ 14632192 (+) True lrriq1
XM_007250573.3 mRNA upstream 79529 14546807 ~ 14557263 (+) True LOC103026424
XM_007250572.3 mRNA upstream 97428 14533728 ~ 14539364 (+) True bhlhe41
XM_007250570.3 mRNA upstream 122646 14405581 ~ 14514146 (+) True LOC103025600
XM_007250555.3 mRNA upstream 261989 14345605 ~ 14374803 (+) False eea1
XM_007249246.3 mRNA downstream 88293 14731792 ~ 14737727 (+) True nts
XM_022679648.1 mRNA downstream 174569 14818068 ~ 14830344 (+) True LOC103031823
XM_007249257.2 mRNA downstream 463864 15107363 ~ 15120305 (+) True LOC103031502
XM_022679650.1 mRNA downstream 490482 15133981 ~ 15137270 (+) True LOC111194769
XM_022679651.1 mRNA downstream 490483 15133982 ~ 15137270 (+) False LOC111194769
TU214177 other upstream 900690 13733945 ~ 13736102 (+) True LOC107197649
TU214078 other upstream 1895793 12735632 ~ 12740999 (+) False hsbp1
TU213920 other upstream 2270022 12362451 ~ 12366770 (+) False LOC103031933
TU213377 other upstream 4694987 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 6065915 8569930 ~ 8570877 (+) True G157055
TU214707 other downstream 406723 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 484869 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other downstream 484869 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other downstream 490448 15133947 ~ 15136198 (+) False LOC111194769
TU215237 other downstream 1735760 16379259 ~ 16379823 (+) True G158779

Expression Profile