RNA id: XM_022679617.1


Basic Information

Item Value
RNA id XM_022679617.1
length 4360
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC103032257
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 12031136 ~ 12333915 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACAAGTGTTCAGCTCTGTTAAAGTTTGGATTTAACCTCGTGTTTGGTCTCCACAGTCTGACTCTGAGACTGAAGGCCTGGCTGCCACATCTACCAGAGACAGCCTTCGTACCAAAGCTGGTGTCCATGTTCTCTCGTCCGTGACTGAGGAGCAGACAGTGGACACATTCAATCTATCCAGAGAAGCTGCAGACGGCGCTGAGTGAATTTAGAAGCCAGACGGAGAAGAGCAGCTCCATCCTTGGCCGTGGGCCCATCAACGTAGACTAAAGGACTAAAGAATTCAAGAAGTGCAACATGGCAAGGGGCTGCCTGTGCTGTTTGAAGTACATGATGTTCCTCTTCAACCTCATCTTCTGGttatgtggctgtgggttGCTGGGAGTAGGGATTTGGCTGGCTGTGTCTCAGGGCAGCTTCGCCACCTTCTCACCCTCCTTCCCGTCCCTCTCCGCTGCCAACCTGGTCATCGCCATTGGTGCCATCGTAATGGTGACCGGTTTCCTTGGTTGCTTGGGTGCCATCAAGGAAAATAAGTGCCTACTTCTGAGCTTCTTCATCGTCTTGCTGATTATTTTGCTGGCAGAGCTGATCTTGCTCATCCTCTTCTTCGTGTACTCGAATAAGGTCAGTGAAAATGCCAAGAAGGATCTGAAAGATGGCCTGGCTCTCTACTACTCGGACAACAACATTGGCCTGAGGAACGCCTGGAACATCATTCAAGCTGAGTGGAAGTGCTGTGGTGTCACTGGTTTCACAGACTGGCATGAGGCTCTCAAGGAAAAGGTGGTACCGGACCGCTGCTGCCAGGAGCACTATCAGGACTGTGGTCGAAATGTCACCAATGAGTTCTGGAAGCGGGGTTGCTTTGAGAAGGTGGAGGAGTGGCTGGATGATAACAAGCACCTTCTGGGAACTATTGGCATGTGCATCTTGGTTGTCCAGCTTCTGGGCATGGCCTTCTCCATGACGCTGTTCCACCAGATCCACAGAACAGGGAAGAAGTACGACGCCTAGCCCGACCCACAGTACTGAGGAGGGGCTCCTCTGCATTATCGTTGGACTAAAACTGGAGACCCCTCCTAATCCGCTGTATACCACCACTGGCCAAGTCCTAACCTTATTCCCCATCCTCACCACCCCAAAACCACCCTGTACAGACATCAGCCACACGTCCCTTCTATTCTCTCTCCCAACGCCACTCATCTGccaaagagaaagagggactgAGAGGAAGGAGGAGTTCCGACTGTTTGGTTTGAAAACTCTGGGGTGGTTGTTTCCCTGTCTTTTTCCAGCTCCTGTAGAACCTTTATTTTGTACGCTTGGACTAACTAACATTGCAGGAAATGGAGAATATCATGACTACAGTAAAACTATGTCGCTTTACTAATGCATAATTCCCACCCTGCAAGGCAAGGACAAGACTTAAAAGACTGATAACCGTGCCACCCCCTGGGTGGTCTGCATTTGAAGTGTTGTTCACACATGTTCGAACCCCCTCAGCAACAGAAATGATAAAAGGTTCCATCTTAGCATGCTGCAGTTTTCTACTCGGTGGAAACCTTTGTCATTTTAGCAGAAGGCTATGTTGTTTGTCCCCCCTCCCCtcaatttgtttgttttggtttgtttttagccCCTTCTTCCCCTTTAATCTTTAGAGATGGCTGGGTAGGTGCATATGAAGATCAGAGATGTTAGCATATTCAAGCTAGTGTATTCAAGTCTGCATTTGCTCATATGTTCAGATTTGTGACGGGCAATTTGAGAGAGGTTGCTAATGGGTAGGAAATTGCTGGCGAGAAATGAGCCTTATGTTGAGATAAAGGAGGACAGACAGCTGTGGATATTTTGAGCCATTTTTCAGTATGTTTGATCACCCTGCCATGAAGATACTCAAACAAGATCACTCAATCAACTTACATCATATTTATATCCCTGTCTAACATCAGATAAACACAATACTTCCATACACAGCATGTTTCAGAGCCAGTGTTGGCGAGTTTTCAGAGCCTGACAGAAAGAGGGAGTGACTGACAGAAAGCACACAGAACGAGCTGAGGTTTGAAAGATGGATTCCGGTTGTCCATTTCTGCTCACGGAAGGCCAGAGTTCAGCATTGGCAGCTATTAGTTTCTGCTCCATCATGCTCAACATCGATATGATGGCCTAAAGCTGCAGCCcagagcttctgctgctgcctgaCAGTTGGTTGCAGCAGAGGAGGagtgtgtattggcaagaacttgacGATACAATGTAATGCGCATTACGCTACAGGGGTTCTGATACAAAGTTTTGAGATTTATACTCCAATagtttataataatgttttatgtgCGATCAAATTTAGTATAAAAACAATCATATTCAtgtaatttaagtaaaataactgTTTGACAATAAGATCAGTAGGATCCATagacagagtacaacactgccatctagtgcTCATGGGTTAAACccaacacctaaaaaaaaaacaatgtctgCCACTAAACTATTCATTAGTTTTCCATATGTTTTTGTTAGGATCCAAGATAGACATTGACACTATGTCAAGGATCTTGAGCGAGCACAATTTCTCTTGGGTGTGTAGACggtgctctctcccctcccACTGTGAATCTGACTGGCACAAGCTTCTGTTGGCTGATATATCAGAGCTGGGGTTTTCACACTTACCTTGGAGCACAGTGACTGCatagtgatgctgcattgctGGAAGTTCTAAAGGAGGCGTTGTCTttcttcacatgtatcgaaggaggcatgcagaaaaagagtaaaatcaTTACAGTGTTGCAAAACATCACAATGCTCCAATATATACATTGATATTTTGTGCATCCCTACAGCAGTGCCATATCAGTCAGGCCTATGTTCATTAATGTGCATTTACATTGTGTCTTCATGGAAAGGTGTGCATTTGTGTACAGATCCCACTACACAACTTTTACAAAATCTTCTGATTCTGGCCCTGATCTCTGAGTCACATTAAATCCTCTCATATACAGAGATGCCAAACAATTGAGCACCCcacacagagctttcagactaaGACTACGCAACAAGCCAAAGCGTGGCTCCAGACGGCTTGTGCATCATTGATCGTACGTCTGAAAGGAAGAGCCTGGGATCTTTTTTGTTGCAGCTCATCTCAGCCagtgtttttctgttctttctgttattttctttaaGGCTAGAACACAACACAGAGGTTACGGTTGTTTGCGTTTCCAACCGACATTCCTATTAGGTGATCTGATTTTGTATCTGCGCCTCTACGATGTTGTGATCCTGCTCCCGTGACTGTCATCTTTGCCAGAGCCCCCAGCTCCGAGGGGAGTGGTAGGAGCTAGATCAAAGGTGCTTTTCCGACATGACGGCAAACAAGGCCTGAAGTGAAAGGCCATTTACCAGCTTAAAGTGTGGCGGCGTTTAATTGCATGCTGTAGGACATGGATTACTTTGTCCAGACTGCAATTGCGGTTAGACATCCTGGCAAAACAAAGGATGGAGGGCGTGTGAGTGGGGTTGGGTCATCACACTGTTCCCTGTCTTGTCAAACCTGGCACCAAGACAGCTGTGACCTGCTCCTTAAGTGTTAATCTAGGAATTGTGGAAGAAAAAGTGCTGTATGAGTGTGATGTGCTGATGATGATAGTACTCATTGAAACGCGTCTTTCTGGGGTTTTCACTGTTGACTGTAGTTTTGGAGgaattgtttttaaacaatcAGGGACCAGAGGTGGCCAGCAGTTCATATTTTCATCCTGAATATGCAGAGAACAGAGAGGAGTCAGGTTCTGATTTGGATGAGCAGAAGAACGCTGTCACTTGTGCATTGCTGCTATgagaaaaatgtgttatttgaggTTCTTAAGAGGAAAAGGACATGAGGGTAATGATTAACAACAGCTGAGAAACATTGAAAACTCTACCACAGTAACCCTGTTGCTTGCTAACATTTGGGGATGTCAGAATGCTGAGAATGTGTGAGTTGTTGTGCAGCAAATAATAGCAAATGCTGATTGAACACAATGGATAGGCCAAAATAAATCTTTcttgtttcctctttttttttttttgtatgacaaaacattaatgCAAACAAACCTGAAACTGGATTGACAGAATTAGAGAATCAGTGTGGATACTATGTATTTGTGTTTCCTGCCAAGTACGTGGCAAAACAATACTAGCCCTGCTCTCATGTTCTTGATATGCCATTATATGCAATTAATtcatttgagtttaattcatttctgAAAGATATTAACTGTATATGTTCTCCAAAATTACTAGGAATGCACCAAAATtggatattttgattaaaacgTAACATAATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213896 lncRNA upstream 434059 11594033 ~ 11597529 (+) True G157781
TU213897 lncRNA upstream 438597 11591964 ~ 11592991 (+) True G157782
TU213888 lncRNA upstream 515479 11515860 ~ 11516109 (+) True G157773
TU213884 lncRNA upstream 519067 11511443 ~ 11512521 (+) True G157771
TU213926 lncRNA downstream 41507 12375422 ~ 12377970 (+) True G157807
TU213927 lncRNA downstream 41507 12375422 ~ 12377970 (+) False G157807
TU213929 lncRNA downstream 45578 12379493 ~ 12384689 (+) True G157809
XR_002651241.1 lncRNA downstream 95853 12429768 ~ 12431720 (+) True LOC111194767
TU214070 lncRNA downstream 314073 12647988 ~ 12650184 (+) True G157903
XM_022679613.1 mRNA upstream 569943 11450922 ~ 11461645 (+) True LOC103046882
XM_022679602.1 mRNA upstream 737915 11269015 ~ 11293673 (+) True nup205
XM_007250962.3 mRNA upstream 765268 11231961 ~ 11266320 (+) True fam107b
XM_007250498.3 mRNA downstream 6091 12340006 ~ 12362527 (+) True LOC103031933
XM_007250504.3 mRNA downstream 181547 12515462 ~ 12524112 (+) True utp4
XM_007250514.3 mRNA downstream 401604 12735519 ~ 12741002 (+) True hsbp1
XM_007250515.3 mRNA downstream 449884 12783799 ~ 12800375 (+) True mlycd
XM_007250516.3 mRNA downstream 1284773 13618688 ~ 13647775 (+) True vps9d1
TU213377 other upstream 2089783 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 3460711 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 4424920 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 4600020 7372376 ~ 7431568 (+) False LOC111194759
TU213920 other downstream 28536 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 401717 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 1400030 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 2716307 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 2794453 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile