RNA id: XM_007250548.2


Basic Information

Item Value
RNA id XM_007250548.2
length 4088
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC103046676
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14280899 ~ 14301400 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGCTGCAGCCTCTGATGAGCCTCAGAACCAGCGATTGAGGCTCAGCAGAGCATCACTATGGAAGAGGAGCAGAAGCAGACTGAATTCAGGAGGGCATGGGATGCCTGCAGAGAAGTTCCAGACATTCAAGATGAGTCAAATCCCAAAAAACGACTGCGGTTCATGAAATGGTTCAGCTGTACCATCGTAGGTGTGCTTGTGTTCGTTCTGGCACTGTTCAGCAAGTCATCCTTTCTGATTTTGGTTACACTTGGAAGCAACTCCACTCTGAGCATCCCGGCAGAACACAAACCGAGCGCTCTGCTGGGTATCGGCTGTGTGCTGGTTGGACCAAGCGTCCTCCTGCTTCTGAAGAGTGTGTGGAAGTTCATTTTCAAAAGTGCAGCAAAACCATCCAAGAAAACCGTTTTGTGGgtGTTAACTGTTGAGTCGGTGGTGGCGTGTGGAGAGGTGCTTCTCACAGTGTTGGCCATGCCCCATTTTGACATTGTCACTAACGTGATGATCCTGAACAGCGTGAGCATCCTGTCTGCGGTGCTACAGGTAGCCGCTGAATGTTGTGCGAATGTACAGAAGAGGGTCATAGTGGTAAAATTGAGTTCCATCATCTTCAGTCTTCTGGGTTACATCCTCTTTATAGTCAGCTACTTGATAAATGAagataaactcttaaaactgataAAACCTATCGGCCTGGCCATTTTTGGAACCATCTGTGTTTCTCTGAACTGGTGGGAGAATTACAGCACCCTCTTCAAAAACCACTTTCTGGAAAAGATCTCCAAAGACATAGCCAGAACCCGGAACGTGGCCTGCATCCTGTCTTCTGTAGTGAAAATTCTCATCACCGCACTTGTGGTTGGAGTTAGTGTCCCTCCAGCAGAATGGTTGTCTCTAAAATCAATCCCCACAACTGTGAGCACCACAGTCTTTGGGTTGGTGGCCGTCCAGATTGCATCCTCTGCGATGTGCCGCTGGTTTGTAGTGGTGGCTTGTAAGATGCACGCCCTGCGCTGCTGTTTTGTTGTGCCCATGTACATTGCATCAGTGGCCGTTCTGATAGTGTTCCTGATTCCACTCGTGACCTTCTACGTACATCCTACTTCTAGCATTTCTTTCTGTGAGAGCAGGACTGTTCAACCCCTACACTCCAGCCCTCAGTGGCTGATGTCCTTATTAACAGAAGTCACAGGCACCCTTTGCACTCGACTTATCGTGGTAGAAAGAAATATTAAAGGACTGGCGATGCTGGGGTCATATGCCCTGTGCTGGTGGTTAGGACTCATTCTGGGCACAGTGTACATCTGGTTTCTGAAGATTCAGCGCATTGAGAGGACTCAGGATCTGTTCTCAAAACAGATGTATGAGGGAGCGTTTCTGGAACAGTCCATGTTGCTCAGCACCTGTTTCAAGAAGCAGTACAAGGAGAGCAGAAATCATGAGATTCTCTCTGAAGACCTAAAAGGCCCTGAGGACCCGTCGTCATTTTTCCTCCACAGATCAGATGAACCTGTGACAGTCTACTTGTGTGCAACAATGTGGCACGAGACATATGCTGAAATGATGAAAATAATCATTTCAATGTTCAGGCTTGACAAATATCGGCCAAAAATCAACAAACCAAAAGATGCCACCTTCGAATTCCACATTTACTTTGACGATGCCTTCAAAGATGTGAATAAGGGCAAAGCGCGGCATGCAAACGAATACGCTGAGATCCTGGTGGAAGTTATCAGAGAAGTGTACACCATCTTCAGTGAGGATGATCCATGTATCTTCAAGAAGAAGCCTTGTCTCCCTCAGCAGAAGATTATCAGCACGCCATATGGGGGCCGTCTGGAGTACACCCTTCCAAAAGGCAACACAATGATGGTTCACCTCAAGGACAAACAGCTGATTCGTCACAAAAAGAGATGGTCCCAGATCATGTACTTGTACTACATCCTGGGCTGGAAACTCAACAGAAAGTACTTTAAGAAGTTTGAAGAGGGTAGTGATAAGAAAACACTCAGGGAGGAGCTAAAGaaagagaaagagaacacgTACATCCTGGCCCTGGATGGAGACACAGATTTCCAGCCCTCTGCTGTGTTGTTACTGATTGACAGGCTGAAGCTTTACCCAGAGGTCGGCGCTGCTTGTGGCAGGATTCACCCCACCGGCACAGGACCGATGGTGTGGTATCAGAAGTTTGAGTATGCAGTAGGTCACTGGCTGCAGAAGACTGCGGAACATGTGTTCGGCTGTGTGCTCTGCAGCCCGGGATGCTTTAGTCTCTTCAGAGGAGCGGCCCTCATGGACGACAACGTTATGAAGAGATACACCACCAGAGCAACAGAAGCCAGCCAGTACGTCCAGTATGACCAAGGAGAGGACCGCTGGCTCTGCACTCTCTTACTGCAGCAGGGCTGGAGGGTGGAGTACAACGCAGCCTCAGACGCCTACACCAACGCCCCACAGGACTTCAAAGAATTCTACAATCAGCGGCGGCGCTGGGGGCCGTCCACCATGGCCAACACCATCGATCTGCTCGGCTCAGGCCGCTTGACCTCTAAAAGGAACAAGTCCATCTCCAAACCCTACATTCTGTACCAGGTCATCAGCATGGGGGCCTCCATCTTGGGCCCCGCCACCATCTGCCTAATGATTGCTGGAAGCTTCACATTTATTATGAATATGGATCCGAATCTGGCTCTTCTTCTAGCCACAGTGCCACCCACAATCTACCTGATCCTGTGCTTCAAGCTGAAGTCTGACACACAGATCCAGATAGCAGCAGTCATGAGCATTCTGTATGCATTCCTCATGACTGGAACTATTCTCTCCATTATTGGTGACATGGTGAAGCAGCAGACATTCATGACCCCTGCTGGCCTGTTCCTCATTAGCATGACCCTGATGTATCTCATTACAGCAGCTCTGCATCCTCAGGAGTTCTCCCTGATCGTCTATGGGCTCTTGTATTTCCTCTGCATTCCCAGCGGCTACCTCATGCTAGTGATTTACTCCATCGTCAATATGAACAATGTCACATGGGGGACGAGAGAGACCGGTGGCAAAGCTAAGACTGCAGCAGTGCATGCCATCAAGAAGCAGGTCATGCAGGCTACATGTTGTAGGTGCCCATGTGGGAGCAGCACTGAAGATGGGCCTTCAAATACGCATGAACTTTTGGAATCGAGTGTACCTGAGCAGCAAGATCTTAAAGTTCCTGCGGATTCTGAAGATGCTGGAAgTAGATCACATGAAAGCCAAACACAGCAAAGTCCTAAAAGCTGGATTGAAGAATTGCAAACAAAATCGGATGACTTCTcgttacacacagctgcacttTCAGAGGATGAAGTTGAGTTTTGGAAAGAGCTTCAGAAACAGTATTTAGAGCCTCTTAATGAGAATCCAGAACAGCAGGAAAAAATTGCCAAGGACCTCAAAGACCTCAGAAACAAAGTTACATTTGGCTTCTTTATCTGCAATGCTATCTGGCTAGTGGCCACCATGTTTCTCCAAGCCATTGGCAACTCAATCTCGCTGTCCATTCCAAAAATCTATCCGAATGGGACGCTTGCAGAGGGCGAATCATTTTCGGTCGATCCAATATCACTGATGTTTCTTCTAAGCTTTGCATTACTGCTGTTCATGCAGTTTTTTGCAATGCTTTACCACAGAATCTACACGCTAATCCATTTTGTGGCTTATGTTGGCACGGAGAGCAAAGCTATCCAAAAACAGTCAAACCAAAAGGCTCCTAAAGCTTTGGAAACAAGCTCCCACAACAAGAACAAGCCTGACACATCAATGTGCATACAAAATCCAGCTGCGGAAGAGACTGGAGCTTGGGTATGAGGCCAAAACTGTGTTTACCTCAATGCTGGAGTTGGCCTGGGTGATAAGACACTGCAATGCACTTTTTTATatcaaatgtgtatttatttattcagtgaaATGAAACATACTTCAAAGTGTACAGCCTTTATTTGAATAGGTTCCATACTGCTTTACTGATCCTCGGTACTGTACTTTCTTTCTATTGTACATTGAAACTAATGAAagagacatttttattttaaaataaaaagcaagaaT

Function

GO: NA

KEGG:

id description
K00698 CHS1; chitin synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214309 lncRNA upstream 90857 14168959 ~ 14190042 (+) True G158093
TU214299 lncRNA upstream 123866 14151418 ~ 14157033 (+) True G158086
TU214298 lncRNA upstream 130410 14149486 ~ 14150489 (+) True G158085
TU214277 lncRNA upstream 164056 14116319 ~ 14116843 (+) True G158068
TU214242 lncRNA upstream 188367 14088466 ~ 14092532 (+) True G158038
TU214518 lncRNA downstream 259250 14560650 ~ 14562131 (+) True G158238
TU214658 lncRNA downstream 609558 14910958 ~ 14919932 (+) True G158335
TU214690 lncRNA downstream 677343 14978743 ~ 14980092 (+) True G158357
TU214697 lncRNA downstream 706105 15007505 ~ 15008083 (+) True G158359
TU214719 lncRNA downstream 768386 15069786 ~ 15070409 (+) True G158381
XM_007250549.3 mRNA upstream 3633 14252396 ~ 14277266 (+) False nr1h4
XM_015606138.2 mRNA upstream 3633 14252397 ~ 14277266 (+) True nr1h4
XM_007250550.3 mRNA upstream 3633 14257752 ~ 14277266 (+) False nr1h4
XM_007250551.3 mRNA upstream 33077 14230480 ~ 14247822 (+) True LOC103047487
XM_015606150.2 mRNA upstream 205361 14059803 ~ 14075538 (+) True LOC103043515
XM_007250553.3 mRNA downstream 6968 14308368 ~ 14321858 (+) True ube2n
XM_007250559.3 mRNA downstream 21812 14323212 ~ 14342320 (+) True nudt4
XM_007250560.3 mRNA downstream 21813 14323213 ~ 14342320 (+) False nudt4
XM_015606160.2 mRNA downstream 22243 14323643 ~ 14342320 (+) False nudt4
XM_022679644.1 mRNA downstream 23539 14324939 ~ 14342320 (+) False nudt4
TU214177 other upstream 544797 13733945 ~ 13736102 (+) True LOC107197649
TU214078 other upstream 1539900 12735632 ~ 12740999 (+) False hsbp1
TU213920 other upstream 1914129 12362451 ~ 12366770 (+) False LOC103031933
TU213377 other upstream 4339094 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 5710022 8569930 ~ 8570877 (+) True G157055
TU214707 other downstream 748822 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 826968 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other downstream 826968 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other downstream 832547 15133947 ~ 15136198 (+) False LOC111194769
TU215237 other downstream 2077859 16379259 ~ 16379823 (+) True G158779

Expression Profile