RNA id: XM_007250549.3


Basic Information

Item Value
RNA id XM_007250549.3
length 2321
RNA type mRNA
GC content 0.46
exon number 10
gene id nr1h4
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14252396 ~ 14277266 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCATAGACTCctctaacagcagcagttaaacCCCGCTACCCAAAGGGTCTCAGAGCTCATGAAGCTGATTGAGGAGATCCTCCAGAAAAGGTAAAAAATTCATCCCATTATTTCTGCTCTGCTCTGAAGAACTAAGCTGCAGTCTCAACTGTGCCCTGAGGTCAACACAGAAGCTCCTGGATGAATGATTGGGTGGGCCCTGATGTCAATGTGGTGGGACCACTGCAGATCCCACCCAGCGATGGGTTCTCAATGCCAGAGGGCTCACATTTCTTTGATATTCTGGCAGAGCACAGCAGCCCTCTGCTTCAGGACCAGGAGGTCCTGCCCTTCGCCAGCTATCCCAGCATGCAGTACTCCACAGTGGAGCCGTCCATGTCCTCTCCGTCATACTACTCCTGCCAAAACTACTACCCCCAGTACAGCCCAGAGGAGTGGTATTCACCATCCGCCATGCTGGAGCTGAGAAAAGGCCCGCTGGAGGGGACCTTTGATACAGAGATGGAGGAATCATCCCCTATTGTTCCCACTGTCATGTATAGAAGATCCAGAAACACTGCCCATCCAGGCAGGGTCAAAGGGGAAgaactgtgtgtggtgtgtggggaCAAAGCCTCGGGCTACCACTACAATGCTCTCACATGTGAAGGGTGTAAAGGTTTCTTCAGAAGAAGTATAACCAAGAATGCTGTTTATAAGTGTAAGAGTGGGGGGAACTGTGAGATGGACATGTACATGCGCAGAAAGTGCCAAGAGTGCCGACTACGGAAGTGTAAAGAGATGGGCATGCTCGCTGAGTGTTTGCTAACAGAGATCCAGTGCAAATCCAAGAGGCTGAGGAAAAACACCAAGTCTTCACTAGAGGACGGCACAGGAGCTGATACAGAGGTCGCTGACAGCGGGGACACTAAACAGGTCACATCTACAACCAGAATGTGTAAAGAAAAAGTGGTGCTCAGTCAAGACCAGCAGGCTTTACTAAATTATATTCTTGAAGCGTACAACAAGCATCGTGTTCCTCCAGATATGGCCAAGAAActgCTTCAGGAACAGTTCAGCACTGAGGAGAATTTCCTGCTGTTGACGGAAATGGCAACCAGCCACGTCCAGGTTCTGGTAGAATTCACAAAAAACATCCCAGGTTTCCAGTCTCTGGATCATGAGGATCAGATTGCTCTACTGAAGGGTTCAGCAGTCGAGGCCATGTTCTTGCGTTCTGCCCAGGTCTTCACCAGGAAACAGCCACAAGGACACACAGAGGTGCTGGAGGAGCGAATAAGAAAGAGTGGCATATCAGAAGAGTACATCACCCCTATGTTCAACTTCTATAAGAGTATTGGGGAGCTGCAGATGCTGCAAGAAGAACATGCACTTCTTACAGCAATCACCATCCTGTCTCCAGATCGGCCATATGTGAAGGACCAGCAGGCAGTGGAGCGGCTGCAGGAGCCCGTGCTGGAAGTGTTGAGGAGGTTCTGCAAGCTGCAGCACCCTCAGGAGCCCCAGCACTTCGCCCGGCTGCTGGGCCGTCTGACCGAGCTGCGAACCCTTAATCATCATCATGCAGAGATGCTAGAGTCATGGCGCACGAGCGACCACAAATTCAACCCCCTGCTCTGTGAAATCTGGGACGTACAGTGACACTACAGCAAGAAATCCCAAAGACTTTTCACTGAATGTTTTTACACAGATGACAAGCTTGGCTTGGCTCTGATACAGAGTCAGAACAACAGTTCAAAATTTAGGACTGactgtaataaatattaaatgttcatCCCTGGATGTCGCCTAACATTTAGATAAATGAGATTTGCATAAGAGAATCGTAAAATAAATagactttagactttagacttTAATTTATTGTCCCCCACAGGGGAAATTTTTCTTGGGCTACCCAAGATTGCTTCCCGCTGAATTGGCAATACAATACAGTCACATAAGCCTTTCAACAGACATAATACAATATAagacaatacaatataatgaaCATAAGCATAAAAGCcagtaaaaatactaaaataaatataacaaatgTAAGATTTCCATCCACATCCTTATCTGTTAGCATTAAGAAGTGTGATCGGTGCAGATATAAATTAATTTCTGTACCTTATTATTCTACCCTTTGGCACTCTGAATCTCCTACCCGAAGGGAGAAGCTGATACTCTGGGAAAAGAACATAAATGTCTTTattctttgtgtttttggacTTTTGGAGAAAAGGAATGATGTATTATTTTTCTAAAGTGCTCAATTTCTTTAATGATCAGACATTTAGTACTGTATTTgcacattaaattatatatcaAATGATA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0032052 bile acid binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214309 lncRNA upstream 62354 14168959 ~ 14190042 (+) True G158093
TU214299 lncRNA upstream 95363 14151418 ~ 14157033 (+) True G158086
TU214298 lncRNA upstream 101907 14149486 ~ 14150489 (+) True G158085
TU214277 lncRNA upstream 135553 14116319 ~ 14116843 (+) True G158068
TU214242 lncRNA upstream 159864 14088466 ~ 14092532 (+) True G158038
TU214518 lncRNA downstream 283384 14560650 ~ 14562131 (+) True G158238
TU214658 lncRNA downstream 633692 14910958 ~ 14919932 (+) True G158335
TU214690 lncRNA downstream 701477 14978743 ~ 14980092 (+) True G158357
TU214697 lncRNA downstream 730239 15007505 ~ 15008083 (+) True G158359
TU214719 lncRNA downstream 792520 15069786 ~ 15070409 (+) True G158381
XM_007250551.3 mRNA upstream 4574 14230480 ~ 14247822 (+) True LOC103047487
XM_015606150.2 mRNA upstream 176858 14059803 ~ 14075538 (+) True LOC103043515
XM_007250534.3 mRNA upstream 229972 14008015 ~ 14022424 (+) True LOC103042895
XM_007250532.3 mRNA upstream 272371 13973827 ~ 13980025 (+) False LOC103042073
XM_015606139.2 mRNA upstream 272558 13973821 ~ 13979838 (+) True LOC103042073
XM_007250548.2 mRNA downstream 3633 14280899 ~ 14301400 (+) True LOC103046676
XM_007250553.3 mRNA downstream 31102 14308368 ~ 14321858 (+) True ube2n
XM_007250559.3 mRNA downstream 45946 14323212 ~ 14342320 (+) True nudt4
XM_007250560.3 mRNA downstream 45947 14323213 ~ 14342320 (+) False nudt4
XM_015606160.2 mRNA downstream 46377 14323643 ~ 14342320 (+) False nudt4
TU214177 other upstream 516294 13733945 ~ 13736102 (+) True LOC107197649
TU214078 other upstream 1511397 12735632 ~ 12740999 (+) False hsbp1
TU213920 other upstream 1885626 12362451 ~ 12366770 (+) False LOC103031933
TU213377 other upstream 4310591 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 5681519 8569930 ~ 8570877 (+) True G157055
TU214707 other downstream 772956 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 851102 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other downstream 851102 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other downstream 856681 15133947 ~ 15136198 (+) False LOC111194769
TU215237 other downstream 2101993 16379259 ~ 16379823 (+) True G158779

Expression Profile