RNA id: XM_007250551.3


Basic Information

Item Value
RNA id XM_007250551.3
length 4085
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC103047487
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14230480 ~ 14247822 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCCTGAACTAACTTCGCCTTCAATCTTTAATGACCTTAACCAGCCTGTCTTACTGCCCTGCTCTAGATGGGACAGGCtctggagggagggaggggttcTCACAGGTTCACAGGTATCTTCAGTATCTGTTGGGGCTGTGAGAAGGAAAGACCAAGCCGGCATCTTTCCTCCTTGGTTGGGTCCAAACATTCTGCAATGAGAGTTCAGTGAGAGCGAAGACTTCAGGCACCTACTGCCAAATCAAGACTCTCTGGACGTGCTTATTCACACCCATGCCAAGCGAAGGAGAATAGACGGGCACCCCATCACATCCCCATTTCCAGAGTCTCCAGCAAGTCCCTCCTCTCCCCAGTTTCTCAGCATCCCACCTCCCCTTCCAGCACACCTCAGTCAGCCCACAGCCAGGAGGAGGATGAGCATCAATGCCTAGTGGACATCTCACCTCATTGGCAAGGCTAGAGCCAGGTCTGTAAAAGAGCAGAGCAGCCAGAAGGAGGGAGAGCGATGCCGTTTGGGGGACTTGCAGGGCTGAAGGAGAAGGTGCTGAAGCCTGGGAAGGAGGAGGTGAAGAACACAGTGGGCGACTCTCTGGGGAACCTACAAAAGAAAATTGATGGGACTAACGTGGATGAAGAGGATCAGCTAGAGCTGACAGAAGATGGCCGGCCAGTGGCAGCCCCCCAGCGCAGCCCACCGTTGCTGGACTGTGGCTGCTTCGGCCTGCCCAAGCGTTACATCATCGCTATTCTCAGCGGTCTGGGCTTCTGCATCTCATTTGGCATTCGCTGCAACCTGGGCGTGGCCATCGTGGAAATGGTTAACAACAACACAGTGTACATCAACGGGACTCCTGTCATGCagCCTGCTCAGTTTAACTGGGACCCAGAGACTGTAGGTTTGATACATGGCTCCTTTTTCTGGGGTTACATTGTCACTCAAATTCCAGGAGGCTTCATCTCCAACAAGCTAGCAGCTAACAGGGTATTTGGTGCTGCTATTTTCTTGACGTCCATGCTGAACATGTTCATCCCGTCCGCTGCAAGGGTCCACTATGGCTGTGTCATGTTTGTGCGAATCCTGCAGGGCCTGGTGGAgGGCGTCACATATCCAGCCTGCCATGGAATGTGGAGCAAATGGGCTCCTCCACTGGAACGGAGCCGACTGGCCACCACCTCTTTCTGTGGGTCCTACGCAGGTGCAGTGATTGCTATGCCTCTTGCTGGAATTCTGGTGCAGTATGTGGGCTGGCCCTCTGTCTTCTATATCTATGGAGTGTTTGGAATTATATGGTATACCTTCTGGCTCCTGCTTGCTTATGACAGCCCAGCTGTGCACCCTACTATCAGCGATGAGGAGAAAATATACATCGAGACCACAATTGGAGAAGGCGCCAGCTTAATGAGCGCTACTGAGAAATTTAAGACTCCATGGCGGCAGTTCTTCACCTCCATGCCAGTCTATGCCATTATTGTGGCCAACTTTTGCCGGAGCTGGACCTTCTACCTCCTGCTCATCAGCCAGCCTGCCTACTTTGAAGAGGTGTTTGGCTTCCCTATCAGCAAGGTGGGCATCCTGTCAGCTGTACCCCACATGGTGATGACCATTGTTGTGCCAATTGGTGGTCAGCTGGCTGACTTCTTGAGAAGCAATAAAATCCTTTCGACCACAACCGTGCGCAAGATCATGAACTGTGGAGGTTTTGGAATGGAGGCCACATTGCTCCTGGTGGTGGGATTTTCACACACACGTGGTGTAGCCATCTCGTTCCTCGTCCTGGCAGTGGGCTTCAGTGGTTTTGCCATATCAGGTTTTAACGTCAATCACCTGGACATTGCTCCTCGCTATGCCAGTATCCTGATGGGAATCTCCAATGGTGTAGGCACTCTGTCTGGTATGGTGTGTCCTCTGATCGTGGGAGCTCTGACAAAACACAAAACCCGCCTGGAGTGGCAGAACGTGTTTGTGATTGCCTCCATGGTGCATTACTGCGGGGTCATCTTTTACGCCATCTTTGCGTCCGGGGAGAAGCAGGACTGGGCAGATCCAGAGAGTACCAGTGATGAGAAGTGTGGCATCATCGGAGAGGATGAACTGGCTCTGGAGACAGAGCCCGGCAGTGACAGCGCCCTCGCCACCAGCAAGATGAAGTCCTACGGAACCACCTCAGAAAACTCAGCCAGCCGCAAGAAGGGCTGGAAAAAGAAAAGGGGGGTGACCATGCAGGAGGACGAGGAGAAGAATTCATACACTTATGAGAACGGGGACTATCAGGAGCATTATCAATGACACTTCATGGGTTCATCATGAGCCCAGGACTGCTCTCACCTCACTGGTGTGCCTGTGAGGTGAAGATTATTGAGTAACTGGTAATCCATCCAATCCTCCAATCCATGGGACATTACCCACGTGACTGCAATatatcaaacttttttttttgcaaatcattatattttgactcGTCACTTTTCACCCCCTCTCTGATCTGGCGTAAAAGTGGGCTGTGGGTGTCTGTTGCCGTGTAATGGACTTTATTTCGAGATATTGGTGGTTTACACTCGTAGGAAACGCCCTGGCTATTTCTTTGGaaatttaaattacttaaataaataaaatatttaaaaaaggaaaagacacCTGAAATAATGTCAGAAGTCACATATAACAACTTAATGGACTTTCTCCAtttgatatgcattttttttgtttcatttcgaTTTTTTCTTGCCTATTGTTGTGAGCCTAGGGTTTGCAGTCCTGACCCTGGAGTAGCTCTGACCTGCCTCTGCCCTGTTCTCTACACAcctttactataaaaaaaacctgtgaAAAGCTAATCAGTATAACACATTTCttctctgcttttgttggagcagTCATTGTCTCTgctgtccagagaagactttATGGAACACTGGTTTATGGTTTGGAACACTGCTCTGAGGAATTGATTACTTTGCTAttaacattttgaaacaaacatttaaagaagAAATGTTTAGTCAGTCAGTTTATCTTTcacttaaattataatttaaagttAGGTCATTTTggacttgttaaaaaaaacccaaagaTGTAATGTTACTTcctttttaaaactaaacatgGTTGACGTAAAACTTTAAGTTAAATGGGCATCATGTAATAGGTTTACATGACAGGATGTAATATTTGCATTCTGTTAACTTGCTATTTGATGTTCAGTTAACACAAACTTTTAAGTCATCCACAAATTCTATTAATTACTTTgcaaatgacttttttttaataaaatttaaatttagggAAATAgaattctacactgtaaaacaggaAAGCATCCCCCAAATGTTAAgtggctcaacttaactcagctTTTGTCAAGGCTTTTTTAGTCAATcaaattgattaaaataatCTTTCAAATCTTTCaaaatgtgcaatatttgttatttttgtggTTTGTTTCCTCTTCCATTAAAGCAGCTAATTAGCCAGTCATTTTTGAGAGGAAGTGGGCGTGGTGTTAGTGCTGGAAAAACACTAAACGGTGCAGAGCAGGATTACTCCAAGACCAGGGTTGGGAAGCACTGATGTAAGCTATGCAATAAAAGGCAAATACTGAATGTGTTAGAGAATTATAAACAGTTTTAGAGGGTCATGATGAACATGCATGTTGTTGGGTAACTTTATCTGACCAAAACTTCTGGCAAAGGACAAAAATCACCTGCCATCACTTCATGCTATGGTTTAGTGTTGTGCTGCGGAATTTATGTGACTGGTTGGATGAGAAAAGAGGAAAGAGGAAGGAGGAACACTGTATCCATATAAATCCATACAGCATTCACATTCAGCATTAAAATTCAGTTCACAAATTACAtttgtggaaatctggaaagactctggaaaaaaagaaaatcatcagCAATGTAGTCTAAAAAATGTAGgttcttttaaatctgtttcgGTGTTCAAAACCAGCAATGTGcctccttatttatttttttgaagcaCGGCTTCAATCTGTTATCAAAGAAATTGAATTGCTTAAATGGATATAAAggtatttatttctgtaactGCAGCTTTtactgtgtgtatgaat

Function

GO:

id name namespace
GO:0050957 equilibrioception biological_process
GO:0055085 transmembrane transport biological_process
GO:0060005 vestibular reflex biological_process
GO:0006814 sodium ion transport biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG:

id description
K12302 SLC17A6_7_8; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6/7/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214309 lncRNA upstream 40438 14168959 ~ 14190042 (+) True G158093
TU214299 lncRNA upstream 73447 14151418 ~ 14157033 (+) True G158086
TU214298 lncRNA upstream 79991 14149486 ~ 14150489 (+) True G158085
TU214277 lncRNA upstream 113637 14116319 ~ 14116843 (+) True G158068
TU214242 lncRNA upstream 137948 14088466 ~ 14092532 (+) True G158038
TU214518 lncRNA downstream 312828 14560650 ~ 14562131 (+) True G158238
TU214658 lncRNA downstream 663136 14910958 ~ 14919932 (+) True G158335
TU214690 lncRNA downstream 730921 14978743 ~ 14980092 (+) True G158357
TU214697 lncRNA downstream 759683 15007505 ~ 15008083 (+) True G158359
TU214719 lncRNA downstream 821964 15069786 ~ 15070409 (+) True G158381
XM_015606150.2 mRNA upstream 154942 14059803 ~ 14075538 (+) True LOC103043515
XM_007250534.3 mRNA upstream 208056 14008015 ~ 14022424 (+) True LOC103042895
XM_007250532.3 mRNA upstream 250455 13973827 ~ 13980025 (+) False LOC103042073
XM_015606139.2 mRNA upstream 250642 13973821 ~ 13979838 (+) True LOC103042073
XM_022679638.1 mRNA upstream 258156 13961055 ~ 13972324 (+) True cry1
XM_007250549.3 mRNA downstream 4574 14252396 ~ 14277266 (+) False nr1h4
XM_015606138.2 mRNA downstream 4575 14252397 ~ 14277266 (+) True nr1h4
XM_007250550.3 mRNA downstream 9930 14257752 ~ 14277266 (+) False nr1h4
XM_007250548.2 mRNA downstream 33077 14280899 ~ 14301400 (+) True LOC103046676
XM_007250553.3 mRNA downstream 60546 14308368 ~ 14321858 (+) True ube2n
TU214177 other upstream 494378 13733945 ~ 13736102 (+) True LOC107197649
TU214078 other upstream 1489481 12735632 ~ 12740999 (+) False hsbp1
TU213920 other upstream 1863710 12362451 ~ 12366770 (+) False LOC103031933
TU213377 other upstream 4288675 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 5659603 8569930 ~ 8570877 (+) True G157055
TU214707 other downstream 802400 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 880546 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other downstream 880546 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other downstream 886125 15133947 ~ 15136198 (+) False LOC111194769
TU215237 other downstream 2131437 16379259 ~ 16379823 (+) True G158779

Expression Profile