RNA id: XM_007250554.3


Basic Information

Item Value
RNA id XM_007250554.3
length 7805
RNA type mRNA
GC content 0.47
exon number 30
gene id eea1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14343739 ~ 14374803 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGCAGACCCGCCTACCCACTCATgtgctgctggttgacgctgcgGTGCGCTGCGCTCCGGGCAGGTGGAAGGAAACACCCGAGAATAACATTATACACCAGCGGAGAAAGACCTCCTGACTCGTGACAgtttaaactacagaaaaacAACGAAACCAAAATGTTCAGACGAATATTACAGATGACTCCTGGAAAAGGGGGCTCCCAAGCGTCTGAGTCTGAGCAACCCTCTGCCGATATGAACAATGAGACTTCGGAGgGCTTCATTTGTCCACAGTGCATGAAGTCCCATAATTCTGCTGAGGAGCTTTTCAAGCATTATGAAGTTTACCATGAGCCTCAGGAGCAGCCCTCTCACCTTAGCCCGGGCAGgGATGATTTGGCTCTTTTGCGGCGGGAAGTGCAGGATTTACAGGCTTCATTAAAGGAAGAACGATGGTTTTCAGAGGAACTGAAAAAAGAACTAGACAAAGCCCAAGGACAACTGAAGCaaGGGGCACAGAATGATGGGCAGGCTGGCACAGAGGAATCGGAGCTGGAGATGAAGCTGCATGAAGCTGAGACTGAGAAGTTCAACATCAAACAGATGAAAGATCTGTTTGAACAGAAGGCTGCCCAGCTGGCCACTGAGATAGTAGACATCAAGTCTCGTTACGATGAGGAAAAGAGTCACAGAGAGGTGGCAGAGCAGAGACTGGCCAGTGTGCAGCAGGACCTTCAGAAGGAGAGGCAGGAGAAAGACAGACTTGCCACAGAGCTGCTTCAGAGGCCTGGAGTAGAGGATGTGGATGTGCTGAAAAAGGAGCTGGTGCAAGTGCAGACACTGATGGACAACATGACACGTGAAAGAGAGGAGGAGTCAGAGCGCCTCAAAAACCAGTATGAACAGCTGCAGGTTAACTTCACTACCTCAGAGATTCGTAAATATGAGACAACTATCGCCCAGCTGAAGGCCGAACTGGAAAAGGGTCCCCAAGAAGCTGCTGTTTACACCCAACAGATTCATCAACTACAGAGCAACCTGAACAACCTCCAGCAACAGAGTCAGCTACTGTCAGAAAAGTTGGCCCGCAAGGAGAAGGAGAACCAGGAGCTGGAGGAGCGCCTGGGGCAAGAGCAGGCCTCCAAGAAGAACTTGCAAGGCAGCCTGCACCAGAGGGAGCTGGAGCTGCAGGAGGTCCAGGCACGTGCCTCTGCAGGGGAGAGTTCACTTGGCCGGACCCAGGCTGAGTTAACTGAACGCGGGGAGGAGGCGGCACGCCTCAGGCGTGAACTGGCAGAGCTGGAGAGGAGCTACCAGGAGCTCAAGGCCGAGCGCAAACAGCTGCATCAgcagaaagaggagaaagagagtcagGGTCTGCAGCAGCAGAGCGAGATCAGTCAGCTGCATGCAAAGCTGCTAGAGACTGAGCGGCAGCTTGGTGAAGTTCAGGGCCGGCTGAAGGAGCAGAGGCAGCTGTCTGGAGAGAAACTCAAAGACAGAGAGCAGCAGGCTGCTGAACTGCAGCTTAAACTGTCCCGATTGGATGAGCAGCTGAAGGAGAGCGCCACCAAGTCCACAGATCTTCAGCACCAGTTGGAGAAATCCAAACAGCAGCATCAAGAGGTGCAGGCTCTCCAGCAAAGCACCAATTGCAAGCTGCGAGAAGCACAGAATGACTTGGAACAGGTGCTGCGTCAAATCGGTGACAAGGACCAGAAGATTCAGAATCTGGAGGCCCTTCTGCAGAAAAGCAAGGCCAGCCTGAGCCAGCTGGAGGCTGAAAGAGAGGATCTGTGTGCCAAGATTCAGGCGGGAGAGGGAGAGGCTGCCTTGCTCAACCAGCTGCAGGAGAAGAACCACATGCTGCAGGAACAGATAACTCAGTTCACAGACAAGCTGAAAAATCAGTCTGAGAGCCATAAACAGGCCCAAGAGAACCTGCATGAGCAGTTGCAGGAACAGAAGAGCCAGCTACGCTCAGCACACGACCGCTGCCAGGGCTTAGAGAGGACTGTGACTGATCTGACTGCCCAGCTCACTCAGAGCAAGGAGAGACTGGCACAGCTAGACACTCAGCTAAAAGCTAAGACAGAAATGCTGCTTTCTGCTGAAGCAGCCAAAAATGCTCAGAGAGCTGACCTCGAGAATCATCTAGAAACAGCTCAGAATGCGCTTCAGGACAAGCAGCAGGAATTGAGTAAGGTCCAGGCACAGCTGGAGGAACAGGGTTGTAGAATGCAGGAGAAGCAGGAACAGTGTTCTCAGCTGGAAACCAGCCTGAAGGAGAGCAGAGACAAGTTGCTGGCTGCAGAGCAGAAGACTGACACCCTGGAGAGCCAAATCAAGAAAGCAGAGGCTGAGTTGACAGAGCTGCGCTCAGCGAGGGAGCTGGCACAGAAAGAGCAGCAGAGACAACAGCAGAAGACTAGTGAGCTAGAGAAAAAGAACAAGGAACTTGGTCGTCGGTTGGACACTGAAAAACAGGGgGCTGCATCACTTCAGGAGGAAGTGCAAAAGAAGAGTTCTGCTTTGGCAGACACAAAAAAGCAACTTGAAGCAGTGGAGAAAAACCGAAGTGGTCTACAGACCAGCTTGGATCAACTCACCAAGGAAGGAAAAGCACAACAGGCTGAGCTGGAGAAGAAGCTCCAGGGCCAGAGTGCAGAGCTCCAGAAGGTTCAGCAGGAGAGGGACACGCAGGGTAAAGAGCTCACTTCGGTAAAGGAGGCTCTGAGCAAGACCTCTGCAACATTGAAAGAGAGCCAGACTCAGTTGGAGAAGGCAAAGAAAAACAGTGCAGCAGCTCTAGAGGAGAAGGAAAAAGCTCACCAGAAGGCACAGCAGGAGCTTCAGAAGAGTGTGGAAGCTACATCTAAAGAACTGAGTACAGCTAAATCTCAGCTGGAGAAAATAGCAGAGGTGGAGAAGGGACTTCAAGCCCAGCAGACAGCATTGAATGCACAGTTGAAACAGACTCAGGATGCtctgaaagagaaggagaaggaggtgCAGCAGCTGCAGGCACAGCTGAAGACAGCTCAGGGTTCCTTTAGCCAAGAAGTGAAGAAACTGCAGAGTCAAGTGGCAGAGCTGCAGGCTGCCCAAACTCAGAagGTGGAAGAGCTGACTAAGTTGAAGGAGCAGATGACGGGGCTGTCGAAAGAGCTGAGCTCAGAGAAAAGTCGCTGTGCAGAAGTGCAAAAAACCTGTGACAGTACCAAGGAAACTCTCACCAAACTACAATCTGACTACTATGGCAAGGAGTCTGAAGTCTCGGCCATGCGTCAGGACCTCAAGgtgtgtgagGACAAGCTGGCTCTTGCTCAGGAGGAGCTGGTAGCCAGCACCAACCAGCTGAACAACCGTGATGCCCAGATCCAGGACCTGAAGGCGGCCAGAGCTGCGTTGGAGAAGGACCTGGGCAAGAGAGATGAAAAGCTCAAACAACAGGAGGAGGCACTCCGACAACTTCAGAAACAACAGGAACTAACACAGGAGCAGCTGAAGAAGGAACACAGTCAAGTGGAGGAAATGAGGGAGGCTCAGAGTGCTCTAGAGAAAGACCGCAGCAAGCTTAGTGCAGAGCTCAAAGCTTTGGCAGACAAGAGTGAGAAGGAGGTCAAAGAGCTGCAGGCAGCGAAGCAGCTGTTACTCCAGCAGAAAGTGGATCTGCAGGGCAAAGTGGAGGCGGCTCAGGCTACGCTGGAGCAGGAGAAAAGAGAACACCAAACTACTCGTGACTCCATCcaacaaacacagcagcagcacaaagcAGAGACGGACAAACTGCAGAAACAGCTGGCGCTGGAGGTGAAGGCTAAAGAGGAGGTGGACAAGCGGAGGGAGGATGCAGAGGCTAAGCTAACGATGCAGGTTTCTGCACTGAATGAGAATGTGGCGACGCTGAAGCGTGAGTGGCAGGGCAGCCAGAGGCGTGTGGGTGAGCTGGAGAAGCAGACCGATGAGCTGCGTGGGGAGATTGCTGTGCTGGAGGCCACGGTGCAGAACAACCAGGATGAGAGGCGTGCCCTGCTGGAGAGATGTGTGAagggtgagggagagattgAGAAGTTGCAGGGTAAAGTGGTGGAGATGAGAAGGAAACTGGATGACACTACAGCAGCCATGCAGGAGCTGGGCAGAGAGAACCAATCTTTACAGATAAAGCAGTCGCAGTCACTCACGCGGAAGTGGGCGGAGGACAACGAGGTGCAGAACTGCATGTCCTGTGGGAAAGGCTTCTCCGTGACCATCCGGAAGcaTCACTGTCGCCACTGCGGCAACATCTTCTGTGCCGAGTGCTCGGCCAGGAACGCCCTGACGCCGTCCTCCAAGAAGCCTGTGCGAGTGTGTGAGGCGTGCTTTGAGGAGCTCCAGGGCTGACTGCCGTCTGCCTCCTCCTCACCCCACCAGCCAGCTGCTCCTCCAGCCTCTCTTCCACACGCTTTACACTGACTCTTCCCGTGCAGGAGAGCTGCTTTACTCAGCCCCACAGGCAGGGGCAGAGAGGAGAGGTGTGGTAGGGCAGCAGGGCTGTGTGGGGGCTGTGGAGAGAGATAATTGAGGAGCAGTCTGCTTTTGATCTGCTGACTGGGCTTGAGGTGGCCGCTCCTCCTTTCTGCCAGAGTGCAGCCGGACCAGAGGGCCAGCCCTCATCTGAACAGTGCCTTGGTCACTTCTGAGACCGTATGGGGTTCTGAAGAatccagagagaaaaaaaaaagggagagcAGTCCAGCAGCTTGGTGCGCTTGGGCCCTTTTCAAAGTTTATTTGTAATAGAAGGGGTTTCAAATGGTTTTAGCTTCTGGATGTCAAACTGAGAGATTTCTGCTGCAAGCTTTTGCTCGTATTCAGCATAGCAGTGGTAAATCTGTCAGAGTAAAATCCAggcctttttttgttgttttagttgTTGTTTATTTGATGTCATGATGTTGAAAGGACAAAGCAGGATGAGACTGTATTCTACAGCAGTGGTTCCCAGCCTTAGTTTTGTTTCTAGTCCTGGAGGACCCTCTGCTTATGTCTTAACACACCTGTTCAAACTATTCAGCTAATTACAAACCTCTTCCCTGAGGTCCTGTAGACAAGTCATTTAAAAATTGAagattttctctgtatttcggTCCTTTTGTTCGTCACAATCATTGTTGTGTGGACAAGAAACGCAGAGCTTTGTATAAATGCTAACATTAAATTGCGTACAGGTTTCTGGCAGAATTCCAAACACCATTTTTTCCTATGCAATGAACTACATAAAGCTTAAAACTACATCTACACACAGATAAGACTACACTTTAGATTTTCATCATATGAATCAATGTAAATGCTGCTTTACTACAAATATATAATTCTCTGTTTAAGTTTAAAGTTCATCATTTAATGACTTGCATAGTTCACAGCTTACAAAAACAGTGAGCAATTTGGCATTTAATCTCTGTATGAGGTACTGTCGCTTCCAACAAGACTAGCATGCTGATGGCTGTGTTtcttttctctgtgtaaatgtgtggaaaatatctttacaaaaaatattgaagaaatattttaaagatatttggATACGTGTGGGTTTTGCCCAGGTGAAAAAAGGTGGTGAGTGAAAGCAGGGCCCTTCAGGATTAGGGTTGTGGGGTCAGAACCACTGCACTACAGCATACTCTGAAGTCTTAGACTAGTGGATCCCAACCCTGGCCTTGAAGGACCCTCTACTCTACATATTGTAGTGTTTACTAAGCTCTTAATGCCTGGTTCACACTTCTGGTATATGATTGGTTGTGATGTGATCACGAGTCCTTCAATTGTTGTGGCTTTCGTACTAAATGACCAGCAGACCATGATCAGCTACACTGGGTCACAAATGACACGAtctggctgctctccagaaacacatTTTGTCACAAGGGTACACAAGAACGTTTTGTCAGCAATCAGAAAACCAGGCTAAACTCATGTAGTGTAAACTGGGCATAAGACACAATATTCAGCTAATCAGCTCATATTTGAGTTGAAGGTGGTGTGTTGGAGCAAGAGTCCTCCAGGTCTAGGGTTGGGAAGCACTGCCTGAGACAGATCAGGGTTGATTCCAGCTTCTTAGATTGAATAGATGAAGCTCTCGTTAGAGACTGGTTCAGATCTTCTTTGTAACTTTAACTTAAACCTTCTTGAAAATTCAGgcatgttttctttctgtaaTTTCAGTGTAACCTAACATGCTTGCGATGCTGCTCATATCTTCATGATTGacactttttgtttctttgtatttttaacacatttttaatgtttcatttattatttcaaCTTTATCAGGTGCATTCTGACAGTATGTATGCAGACTTCTCTAATGATTAACTGGTCATGATTCTTCACACAATCCATTATTTGCACAAGCTTATGCTCTGCTGTTAAGCAATAATTGTGGTGCTGTGGCTGTTCTTGTGTGCgcgttgtgtctgtgtgtgtgcgtgcgtgtgtatGCATAGAAAAGCCTAAAGGTGTACTGATTGTATAATGCGCAAAACATGGGTTGTCTCATCATCAAGCAATCTTTTACCATCCCTCAGCATTCTGCATCATCTGTGAGGGAAAAAGTACCTTTTAAGAAGACCATGATGCAGTCATTATCTTATGTCTATGTCTACATGTAAAGAGAACGGCAGTGATGTCTGCATGGATGCTAGAAGCTGCGGGAATTAACTGAATGGAAGTGCTAAATCTGTAACTAAATGCAGTTTGGACTCCAGGTTCCGTTGTTACCCTGCACAGATACCTGTAGCTGCTGTCTGGTCCTCTCCAGCACTGTATTGGCTGTTGTCTAGCTGTGCCACAGTGATGTGTTTGTTGCTCTACAGGCAGAAGAAGGCTTGCCTCAGCattgtggtggtgatggtggtacTTAAGTGTATTTCAGGTGCATgcctttactttacttttcttATTCACACTGCagtgtccttttttattttctttaaggCCCTGTCCACATGtacctggatttttttttcttttttggtcaaaatttaggttttcatccattttgttttttttccattcacaAGATAATGCAGTTTCAGCGAGCTTTTCAAAAAATGCTTGCCGATTAGGGCTGctaccaatgttttttttttggtagtcgactgaactgttcattatttttctgattatttcattagtcagcatttttttctgccatgccctccaTCAGTTTTCCTGCAAAACAAGAGTAACAGATAGACATGGGATTCACAGAAGACATGTAAATGTGGATTGTTCTAAtctgtttgggcacttttggtgACCAGCCTATAATCCTCCCCCCAACGCgccattttaaaattaatgattagttgacaatgaaatttgtagttgaTAATTATTTTTCTAGTTCACATTATTGATTATGTTGACTAATTGTTACAGGCCACACAATgtggagatttttttaaagctctgtcATCAGTGTTGTTTACACAGTTTAAACAGACTTTTGTGTAAACACTGATGGCAAAAACGCATGTATGTTTCAGGCTGAATCTCAAATACCTCTTTACTCCTTTATATAGTGCTACATAAGGCATAAAACAGCTACACCTACATGTAGATCACCCAAGCTTTCAGATTTTGAtgtataattaaatgtaaatactgcTCCATTACCAATATATAATACTTGTTAATATGTACTATTTTTCAATTTATAATTTGTAATTCTGTCACTTGTCTTATACATTATGTAAGTAGTGTATACTGTCTctggaactattttttttaaaacagaaggAGGGCAagcctaaaaatatatttaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K12478 EEA1; early endosome antigen 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214309 lncRNA upstream 155563 14168959 ~ 14190042 (+) True G158093
TU214299 lncRNA upstream 188572 14151418 ~ 14157033 (+) True G158086
TU214298 lncRNA upstream 195116 14149486 ~ 14150489 (+) True G158085
TU214277 lncRNA upstream 228762 14116319 ~ 14116843 (+) True G158068
TU214242 lncRNA upstream 253073 14088466 ~ 14092532 (+) True G158038
TU214518 lncRNA downstream 185847 14560650 ~ 14562131 (+) True G158238
TU214658 lncRNA downstream 536155 14910958 ~ 14919932 (+) True G158335
TU214690 lncRNA downstream 603940 14978743 ~ 14980092 (+) True G158357
TU214697 lncRNA downstream 632702 15007505 ~ 15008083 (+) True G158359
TU214719 lncRNA downstream 694983 15069786 ~ 15070409 (+) True G158381
XM_007250559.3 mRNA upstream 3285 14323212 ~ 14342320 (+) True nudt4
XM_007250560.3 mRNA upstream 3285 14323213 ~ 14342320 (+) False nudt4
XM_015606160.2 mRNA upstream 3285 14323643 ~ 14342320 (+) False nudt4
XM_022679644.1 mRNA upstream 3285 14324939 ~ 14342320 (+) False nudt4
XM_007250553.3 mRNA upstream 23747 14308368 ~ 14321858 (+) True ube2n
XM_007250570.3 mRNA downstream 30778 14405581 ~ 14514146 (+) True LOC103025600
XM_007250572.3 mRNA downstream 158925 14533728 ~ 14539364 (+) True bhlhe41
XM_007250573.3 mRNA downstream 172004 14546807 ~ 14557263 (+) True LOC103026424
XM_022679646.1 mRNA downstream 213655 14588458 ~ 14632192 (+) True lrriq1
XM_007249249.3 mRNA downstream 261989 14636792 ~ 14643499 (+) True alx1
TU214177 other upstream 609503 13733945 ~ 13736102 (+) True LOC107197649
TU214078 other upstream 1604606 12735632 ~ 12740999 (+) False hsbp1
TU213920 other upstream 1978835 12362451 ~ 12366770 (+) False LOC103031933
TU213377 other upstream 4403800 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 5774728 8569930 ~ 8570877 (+) True G157055
TU214707 other downstream 675419 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 753565 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other downstream 753565 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other downstream 759144 15133947 ~ 15136198 (+) False LOC111194769
TU215237 other downstream 2004456 16379259 ~ 16379823 (+) True G158779

Expression Profile