RNA id: XM_007250931.3


Basic Information

Item Value
RNA id XM_007250931.3
length 4548
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC103030146
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8844976 ~ 8871398 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTGGGGAGTGTGATTGGGTGGTGGTGTGGATGATGATGAGACGGAGGTGTATggtgggagagagaggaagatttCTCAGTAAGTTGGGGGATGAGGCAGGATGAGGCTGCTGGGTTGGGTTGTATCTGTTTGGTAGATGAGGATCTggagggctgctgctgctgctggtctgTGTGAGCTCCGCCTGGGCTGAGAGCGTGTTGTCGCTGGTTGGTCATtatggCTGATTATCTAATAAGTGGGGGCACAGGCTACGTTCCTGAAGATGGCCTCACTGCccagcagctcttctccatagGAGATGGTCTCACATACAATGATTTCCTAATCCTGCCCGGCTTCATTGACTTCACCTCTGATGAAGTGGATCTGACCTCTGCTCTGACGCGAAAGATCACCCTGAAGACCCCTCTTATTTCTTCTCCAATGGACACTGTGACTGAATCCTCCATGGCCATTGCTATGGCTCTGATGGGCGGGATTGGGATCATCCATCACAACTGCACTCCGGAATTCCAAGCAAATGAGGTTCGGAAAGTTAAGAAATTCGAGCAGGGCTTTATCACAGATCCAGTAGTGATGAGTCCCCGGCACACTGTTGGAGACGTGTTTGAGGCCAAGATCCGACACGGCTTCTCTGGGATCCCGATCACTGAAACCGGCAAGATGGGCAGCAAGCTAGTGGGCATTGTTACGTCACGAGACATTGACTTCCTCTCAGAGAAGGACTATGACAGGCCATTGGAGGAGGCAATGACGAAAAGAGAAGATTTAGTTGTTGCTCCAGCTGGAGTTACACTAAAAGAAGCAAATGACATCCTGCAGCGCAGCAAAAAAGGTAAGCTGCCCATTGTGAATGACAGTGATGAGCTTGTGGCTATAATTGCTCGCACTGATCTGAAGAAGAACAGAGACTACCCCCTGGCCTCGAAAGACTCTCGAAAACAGCTGTTGTGTGGTGCTGCAATTGGTACTCGTGAGGATGACAAGTACCGGCTGGACCTGCTCATGCAGGCTGGAGTTGATGTGGTGGTGCTGGACTCATCTCAGGGAAACTCAGTGTTTGAGATCAGCATGATCAACTACATTAAACAGAAATACCCTGAGCTTCAGGTGGTGGGTGGCAATGTTGTAACAGCTGCTCAGGCTAAGAATCTAATCGATGCTGGTGTGGATGCACTCAGAGTGGGCATGGGCTGTGGATCCATCTGCATCACACAGGAAGTGATGGCATGTGGCAGACCCCAGGGCACCTCTGTGTACAAGGTGGCGGAGTACGCTCGGCGTTTTGGAGTGCCAGTAATAGCTGATGGTGGCATTCAGACAGTTGGGCATGTAGTAAAGGCTCTGGCTCTGGGAGCATCCACAGTGATGATGGGCTCCTTGCTAGCAGCAACCACTGAAGCACCTGGGGAGTACTTTTTCTCGGATGGAGTACGGCTGAAGAAGTACCGAGGTATGGGCTCTCTGGATGCCATGGAGAACAGTAGCAGCCAGAAACGCTACTTCAGtgaggGTGATAAGGTGAAGGTTGCTCAGGGAGTATCTGGCTCGGTTCAGGATAAGGGCTCCATCCATAAGTTTGTCCCTTACCTCATTGCTGGAATCCAACATGGCTGCCAGGATATTGGGGCAAAGAGCCTGTCCATCTTACGATCTATGATGTACTCTGGAGAGCTGAAGTTTGAGAAGAGAACCATGTCTGCTCAGGTGGAAGGAGGCGTCCATGGCCTGCACTCATATTCTTTTGTGCCATTTATGAAAAGCGACTATACTGAGAGCGGCAACAGAGGACAGTCAAGAGCTTTCCCCAACGTTCCGACTCCAACTGTGACCAAACACAATGGATTTATGTGATTTCTACACGCCCTACTCCTTTCCTCGTCACCCTCCTTCCCTCTGGTCATCCTTCTGGGAAGAAATGATGGTGTATTGTTCCTCACCTCTGATGTGAGCATCAATAAGGACCCACGGCAAAGGTGTGCAGATACCTGGATACCGGCCTTGCAACACAGACACGAAGAGTTCCTGTGCACTTTCTGCTTCTATTAAAGCATAAAACCATCTCAGTGAGGCATCCTGGCTTTCTCTGTGTAGACTATCATGTCATTGATATATTGAGAGTCCTTACCAGTTTAAGTAAATGTCCTATTTTCAAGAACCAACATTATTATACAGATTATACCATGCACAATTTccagaaacacacacttacttctCAAGAGTTTGACCAGCATTGTCATCACTTTAAGCAAAATTTGTCTTGTGGGATGTCTCACTTTGTGGGTCCTCTAGCAATAAGCTTTAATAATGTGACATGACCTGACTGTTTTTTAAGGCACTGAAAGAACTGGGGATCTGAATGGAATGAATGTAAACTGTTGAATACTGTTGAAGTGCATGGTCTAGTTCACAGGCTACTCATTTCAGGATGCTTCTTAAGGCCTTGGCATACTTCATGCAGAGACAACGTTTGCGTGGCTTCAGCGAACAATGGGATGTAATTGCAGAGAAAAGTAATAGTCGCAGACGTCGCATAGGGGCTTCGCTCGCCCAGCTTTGTGGATGAAGCCACAGAAAGTATGCCAGCTCAAAGGCTGGCGAAAGCCCGCTCGACTTTGTGCAATGCTCACAAACTTTGTTTTGCTGGAAGTATGCAGAGGCCTTCAGGGTCTCCAGTTAGACAGCTAAGACTATGGAACCAGAAGCCAAGCATTAGCCTTAAAGTCAGGGATCCTCTAAACCTGCACGCCTTATGAATGTTAGCAAAGTGTGGAATTATCATCCTACAATTGGAAACGATTGTAATGTTTCATTCAGGCAATGAGGGATGAACAATGAGtcttgaccaatagaaataatacaaatttCAGACGCTTGGTGTTCACACGCTTTGGGTTGAGTCAACTCACTGagtgaatcaatgattcaaaacaagCCCATGCGTTCCTATCACGCGCTGACCTTGTGTACACACAGCCATGGAGTTATTCACACTGATGGACACTAGATTATTTTTCTGAATGCAggtttgtgactgaaaattgagaaataacgCACTAAACGAGTCGCAGACGAAACTTTGAAATAgcgattattattgttttccacaattaatcacagatccCGTTTTAGAAACAGTATACATTTTTTCTatctaaatatatgctttatctTACCGAGTGTTTGTGTCGAAAGTGCTGGAACAGTGCCAGAACTTTTTCCGGTACGAGCCTAGTCCTCGGATTGAGCAAAATGTTGAGAAAATATGCCCACATTAGTTTGTGGAAGGCGCCGGTAACCAAGATAAGACGAATAAACAGTTTAGAAATTAGTAGCATTTTcggatattttagattttaaaaataaaatacatgaatgTAAAATCGCTATTACTtcattttgaaaatcgcattaaaactgtaatttttaattaaccaaattaatcgtgaaaatcgtccagcactaatagaaatatatactgacaaacaaaaataacatacaCATCCTTGGCCTGcctggttgccagattgatTACTAATCTAAAAAAGCATTTATGGGACCGGCTTGGACAGCAGCTTCAGCAAATTATGAGTGTCATAACATAGTTtgcaacattaaaacatttcactTGATTCCAACAACTTCTTGTCAATGAGTGTACATGTACataataatgtgtaaatgtatatattaatatgatatataatataaataaaatactagaaaatatatagaaatgctATTTATATATGAGTGAATGATTACAGTgaaaacagcactgcagcataATGGAAACAGAGGGCTTTCTTAGTAGGCTTTAAACATTCCTTTGACTTTGATTTTGACCCCGAGTAGAGCGTCATCCATCATGCTGCTTTACTTAATGCTATTACACTGTACAGATTACTTAACCTGGAAGCCCAACATGGTCTACTTGCTGTGTGCTTTAAATCCTGGGTAATTCTGTAAAAAGTATGGTAGAATTGATTGATAATGAAAGTTGGACTCCATTCATTCAACTCAACAGTGGATGTGTGCTTTGATGGTGTTGAATGATGTCTGATGGtcctgttgtctgtctgtctgtgggtTTACTTCACAACAAGCCCCTAAAGGCAAGTCAGATGTTTCATTGAATTTGTACAGAACATTTTGGAGAAGAGAAActgctaaagaaaaaaataagtttattatatattttattatagtgCTGTACTTTATTCTCTATTCTTCTGTAATAAACCTGTAATGAACCTGCTATGAAAAAGAACTGATGATATATTAATAACAACTTTCTTTAAGTGAAAGAGTGTCTACTAGGCCACTGTTTTACAGTATAAGAAGGCCTGAAAAGTGAGATCAGATGGTTGCAAATGATCACATGTAAAGCAAATAGAGCTGAAAACTCTGAAACTGTGAAGTTTGGGGCACTGTTTATGACTTCTGTGTATGACAAGCTTTTGCGGCTTATGTATTAATCTTGCTGCACAGGAGTATCTTCAAAAAGAGTACCCTCTTGTTAATAAAGATGGTTATATTGTGAA

Function

GO:

id name namespace
GO:0006177 GMP biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003938 IMP dehydrogenase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0030554 adenyl nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212966 lncRNA upstream 164455 8680809 ~ 8683103 (+) True G157069
TU212961 lncRNA upstream 239537 8603589 ~ 8608021 (+) True G157064
TU212947 lncRNA upstream 279095 8568244 ~ 8568463 (+) True G157054
TU212945 lncRNA upstream 279890 8566429 ~ 8567668 (+) True G157052
TU212918 lncRNA upstream 409289 8432614 ~ 8438269 (+) True G157027
TU213140 lncRNA downstream 20692 8892090 ~ 8894941 (+) True G157210
TU213183 lncRNA downstream 77427 8948825 ~ 8949097 (+) True G157224
TU213185 lncRNA downstream 94773 8966171 ~ 8966371 (+) True G157226
TU213278 lncRNA downstream 472433 9343831 ~ 9344700 (+) True G157305
TU213285 lncRNA downstream 521904 9393302 ~ 9393516 (+) True G157311
XM_022679407.1 mRNA upstream 10945 8831429 ~ 8836613 (+) True LOC103043520
XM_022679569.1 mRNA upstream 21100 8820102 ~ 8826458 (+) True LOC111194761
XM_007233833.3 mRNA upstream 282060 8555188 ~ 8565498 (+) True prpf18
XM_007233834.3 mRNA upstream 282060 8555188 ~ 8565498 (+) False prpf18
XM_007233844.3 mRNA upstream 314391 8520018 ~ 8533167 (+) True cpt1b
XM_007250933.3 mRNA downstream 26179 8897577 ~ 8902959 (+) False LOC103031618
XM_022679573.1 mRNA downstream 26268 8897666 ~ 8902959 (+) False LOC103031618
XM_015606265.2 mRNA downstream 26490 8897888 ~ 8902959 (+) False LOC103031618
XM_007250934.2 mRNA downstream 26498 8897896 ~ 8902959 (+) False LOC103031618
XM_022679572.1 mRNA downstream 27697 8899095 ~ 8902959 (+) True LOC103031618
TU212948 other upstream 276681 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 1240890 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 1415990 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 1443002 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 3690158 5157154 ~ 5157400 (+) True G156188
TU213377 other downstream 1069431 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 3491053 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 3864234 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 4862547 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 6178824 15050222 ~ 15050718 (+) True G158369

Expression Profile