RNA id: XM_022679572.1


Basic Information

Item Value
RNA id XM_022679572.1
length 2095
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC103031618
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8897577 ~ 8902959 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTTATTTGCTGTACAATTTTTTCCCTTCAGACGATGTATTAAATCAAGGAAAGATGTGTCAAATTATGGGAATTTTAGGAAAAGATGTAGCTATTACCCTGAGGgagtgataaataaataatgggaGTGTTTTTATTAACTTGAGGATTAAATCAAGACCAGTATTTAttaacttaaagaaaaaaaaaatctctaaggGGCTGTGTAAGAACATATGAGTGTTTTATATGATGTTTAAAAACCATCAttgtaatacataataaaaggCTTTTGGAAAACTCATACTGAACAAACATATAAGTTATGGATGTGTTGGCCGATGATGACCACATGACTACTAACCACGTgtacagacagaaagatataTAATATCAAATCTAATCAGTCACTTTTATGCCAAATGCCCATAAATTGGATATGTATTTGATCTAGAAATAGACTCAAATCTGAATTTAATACGTCGTGAAAAATCAGATCTGTGTCGCATTTGAGTCAAAAAACACAGATTCAGTTCTATGCCTGGCAGTGTGAATGTAGCCTGGCATGTTATGTCACAGTAACCGTGTTGTGTTCACCAGCTTTAACAAGGTCAGACCTTGTCTAATGATAGAGGAGGTTCCCAGAAACAAATATCTCTGAAAGTGTGCCATCTTATTTCTGTGTTAAAGTTCAAGAGGCTTTATTGTCAGAGGTGAAGCTAATTTACATATGTTCCTATATTATAATATGCctctatttctattggtcagtcCTGACCTTCGAACTCAACACCACACTACAGTTTTACCGGTACATAATGTACAAAAAACAGTGGGGCACAGATACAGCACTGATGCCACaccactgacagGTCCTCCACTGTCATGTCCTCCAGGAATGTAAGCTTCAATGGGGTAGCGAGACACACGATCAGGAAGGGCGTTACATTCTATGCAAATGATTCTGTGGTCAACCCTGTAGCTGCTGGCCCACCTGACCAGCCCAGacctcttctgcttcttctgccaTGGTTGGGCTCCAAGCCACATGCCCTGGCCAAGTACTGCGAGATCTACCTCAAAACCGGATTCGATGTCCTAGCTGTGGAGACAGAGGTGGGAAGGTTCCTGTGGCCTCGCAGGGGGCTGGAGTACGGGGGCCAGCTCCTGGAGCTCCTGGAGAGTGAACGTTTCGCACAGCGCCCCCTGCTGGTTCACGCCTTTTCAATCGGAGGATACACTTTTGCCCAGATTCTTATTCATATTGCCAGAGATCCCCAGAGATATCAGGGCTTGACCAGCAGGATCAAAGGACAGATTTATGACAGTCTGGTTGTGGGTTCATTGGAGCGGATGGCTAttgGTGTGAGTCGGAACTTGTTTCCCCGCTGGGGGCCTGTGGTAAAGCATGTCAGCCTGCTTTATTTCTACATGTTCAAACGCCAGACTGTGGACTACTTCAACATGGGCATTGACGCATTCAAGAAAACTCCTGTTCCAGCTCCTGCACTTTTCTTCTACTGTAAAAATGATGCACTGTGTGATCCTGAAGCTTTGGAGGAAATGTTGGAACAGTGGGATAAACTGGGTATTTCTGTTACTAGCAAAAAGTGGGTAGAGTCGATCCATGCAGGGCATCTGCGTGCCCATCCTCAGGAGTACATGTCCATCCTGAAAAACTTCCTCTACTATCTCAACATGGTGCCACTCAAGGCTAAACtgtaaaacatacatacagttacCTTATATTCAAGGTGTTTGATGTTTAGAATTTTGTTGAAAACACAATaagaattaattttaatattattgataAAGTTGTGTGCCTTGACACTTGTTGCCTAACATAATTAATCAATATGaggcatatgaaactgtttgtCAGTTAAAGAGAGGttgattataaaatataaaaaacccTGGTGTAACAGTATGCTCAACCGTTATAATACCTCTGTATAGTGTTGTTCCATGTACTGTATTCCACTGatgtaaaaagtacatttagacttttatagtatgttttttatggtttatATGTTTTGACATTACTAATGCACATGTATAAGTCTCCTTTTAGGGTTAAATGGTCACTTACAATAAAGAAGAaacact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213140 lncRNA upstream 4154 8892090 ~ 8894941 (+) True G157210
TU212966 lncRNA upstream 215992 8680809 ~ 8683103 (+) True G157069
TU212961 lncRNA upstream 291074 8603589 ~ 8608021 (+) True G157064
TU212947 lncRNA upstream 330632 8568244 ~ 8568463 (+) True G157054
TU212945 lncRNA upstream 331427 8566429 ~ 8567668 (+) True G157052
TU213183 lncRNA downstream 45866 8948825 ~ 8949097 (+) True G157224
TU213185 lncRNA downstream 63212 8966171 ~ 8966371 (+) True G157226
TU213278 lncRNA downstream 440872 9343831 ~ 9344700 (+) True G157305
TU213285 lncRNA downstream 490343 9393302 ~ 9393516 (+) True G157311
TU213288 lncRNA downstream 601115 9504074 ~ 9507133 (+) True G157312
XM_007250928.3 mRNA upstream 27697 8844976 ~ 8871398 (+) False LOC103030146
XM_007250936.3 mRNA downstream 1776 8904735 ~ 8919978 (+) True rbm28
XM_022679974.1 mRNA downstream 207135 9110094 ~ 9114054 (+) True LOC111194832
XM_022679575.1 mRNA downstream 211020 9113979 ~ 9116076 (+) True LOC111194762
XM_022679576.1 mRNA downstream 211020 9113979 ~ 9116076 (+) False LOC111194762
XM_007250938.3 mRNA downstream 391614 9294573 ~ 9299415 (+) True lrrc4
TU212948 other upstream 328218 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 1292427 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 1467527 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 1494539 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 3741695 5157154 ~ 5157400 (+) True G156188
TU213377 other downstream 1037870 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 3459492 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 3832673 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 4830986 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 6147263 15050222 ~ 15050718 (+) True G158369

Expression Profile