RNA id: XM_007250963.3


Basic Information

Item Value
RNA id XM_007250963.3
length 1630
RNA type mRNA
GC content 0.43
exon number 4
gene id fam107b
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11231961 ~ 11266320 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCCCACTGAAACTGAATctgaatcagcagcagcagagccggTGTGGAGCTCCACTCCCTCAGTGTTACTCAGACTAACAGGAATACATTCACCTCCGCTCCAggctttctcttctctttagcTCTTTAACACTCAGACACCATGACCACCATGTTCAGGTACCCAGTGTTTCCAGTCCTGCCAGgtCTGGATCAGTCGGAGTTGACGGAGAGATTGCCTCGTGTGCGGAGCATCATGGCAGAGCCGGATTACATGGATGGAGACTGTGACGAACTCATTAAGCCCAAGAAACTCATCAACCCTGTGAAAACCTCCAGAAACCACCAAGACCTACACAGAGAACTCCTCATGAATCAGAAGAGGGGCCTGGCACCTCAGAACAAGCCCGAGCTGCAGAAAGTGAtggagaagaggaagagagaccAGGTGCTGAAAGCTCAGAAGGAAGAGCAGGAAGCTCATAAGAAGCAATCAGATTTGGAAATTGAGCTCATGAAGAGACAGCAAAAACTTGAACAGCTGGAGTTGGAGCAGCAGAAGAatgaggaggagcaggagaacACCCCGGAATTTGTTAAAATGAAGAGCAATCTAAGAAGAACCAAGCAGGAGGTGGACGAACAGGAGCGCACCACCTAGACACACTATGGGGGGTTTAAACGAGTCCATGGCACATGAAAGCATGGCAACCGGACTGCAGATTTGTGGGGATTCCCTGGTGTTCCTGCTCCCTGTGTTCCTGTGAAAACCGTGAATGGTTCCTATTGCCGACCTGCAGACACGACCAGTATTCACTTACCCTAACCCCTAAACACCGGCAGCAAACAGAGGGATTGAAATGAAAAATGCGCACTCAGACACAAAGGCACAGTCTCCCCGTCACTGGCTGGTTGGCTGGATGGCGGGCTTTGGTGGACTTGCATGGCAGGACGGACAGAACACACGCAGAGTTTTTCCAATTcgttttctatctctctctttctttagcttatcttaattttcattttttctgctgtttcttgttttcttttttaacttattttcagAAATTCAAGTTTAGAGGGACACTGGATGGACTTGTGCAAGCCTAAataagtgtttgtttttttcagttttgccttggaatgatgctgatgatgaggGGTTTTATGAGGACTTTATACCCTCCTTTTGGTTGatgatcagaaaaaaaagaaagaaaaaaatatgaatatggatTCTCAACAGTTCAACCTTTGGCTGTGATGTACAGAtgtttgctttattttgttgttttaatcttCATATCTGTGCACTCCTTCTAAGCTACATCTATTTTAAGCAATACTAGAACTAGGTTGGTgtgtttttgaatatttttgtttttctttttttacaaataaatttgttATAAATACAGTTTAGTTGCAATGGTGTAGAACACTGTGTTGAGGCactcttgtatttttttccacaccTGAGTAGTAATTGTTGAGTGCAATCAGGAAGGTCTAGGaaagaaatgcattttttgttagtTCAGTATTGAAGACTCACAGTCTAATGTATAGATTTGAGCCAATGCCCAACCACTCGTGCTCCCTTTAATTCAGAAAAActtcttttaataaatattattttgtcatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213619 lncRNA upstream 112106 11132366 ~ 11143469 (+) False hipk2
TU213612 lncRNA upstream 236762 11018415 ~ 11018813 (+) True G157557
TU213593 lncRNA upstream 373107 10881730 ~ 10882468 (+) True G157546
TU213587 lncRNA upstream 498913 10755079 ~ 10756662 (+) True G157540
TU213586 lncRNA upstream 501192 10751729 ~ 10754383 (+) False LOC103038570
TU213791 lncRNA downstream 43695 11310015 ~ 11314603 (+) True G157703
TU213866 lncRNA downstream 201606 11467926 ~ 11468139 (+) True G157761
TU213869 lncRNA downstream 221740 11488060 ~ 11489560 (+) True G157764
TU213871 lncRNA downstream 225919 11492239 ~ 11492486 (+) True G157766
XR_002651240.1 lncRNA downstream 227295 11493615 ~ 11501536 (+) False LOC111194766
XM_022679598.1 mRNA upstream 48830 11146162 ~ 11206745 (+) True LOC103046273
XM_022679597.1 mRNA upstream 48830 11146162 ~ 11206745 (+) False LOC103046273
XM_022679600.1 mRNA upstream 48830 11146162 ~ 11206745 (+) False LOC103046273
XM_022679599.1 mRNA upstream 48830 11146162 ~ 11206745 (+) False LOC103046273
XM_007250961.3 mRNA upstream 117597 11031065 ~ 11137978 (+) False hipk2
XM_022679602.1 mRNA downstream 2695 11269015 ~ 11293673 (+) True nup205
XM_022679613.1 mRNA downstream 184602 11450922 ~ 11461645 (+) True LOC103046882
XM_022679616.1 mRNA downstream 764816 12031136 ~ 12333915 (+) False LOC103032257
XM_022679617.1 mRNA downstream 765268 12031588 ~ 12333915 (+) False LOC103032257
XM_007250499.3 mRNA downstream 953597 12219917 ~ 12333915 (+) True LOC103032257
TU213377 other upstream 1313770 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 2684698 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 3648907 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 3824007 7372376 ~ 7431568 (+) False LOC111194759
TU213920 other downstream 1096131 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 1469312 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 2467625 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 3783902 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 3862048 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile