RNA id: XM_007250997.2


Basic Information

Item Value
RNA id XM_007250997.2
length 1577
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC103026427
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22081194 ~ 22084499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAGCAGCTGTAGTTTACAGGTAAACACCGTATCCAGCGTCCGGCCGCTCCAGCAGGAGGGAGGAGGATCCGCAGAAACAACCGGGTCACAAACAGAGTCTGAAATCCTTTACTGGGGCAGCATTAGATTTACAGGACGATCAGAGCATAATGCAGCACACACTGCATACAATCTCTTTAAGGACCAATTAAAATGATGCTCATTGTCTTTACTTTATATGATTTCTGCATTCAGGAGTCTGAAAACAGCCTGAGAAACAGCTACTAAAGATTAAACATATCCACATATCTCAACTATGACGCGAACCTTCCCACAGCTTCTCAGAGATTACCTGGACGAGCGCCGTATTAACAAAAACCGCCTGGTGACCAAAGATGGCCATTGTAACATTGAGTTTGGCAATCTGAGGTACAGCAGTCGCTTTGCCTACGTGCTAGATATATGGACCACCATCTTGGAATTCCGCTGGAGCGTCGTCCTCTTCCTGTTCTCCGCCGCATTCCTCCTCAGCTGGTTCATTTTTGCGCTCCTCTGGTTTTGGATCGCGAACAATAATGGAGACTTATGGTGGCAGAACCCTTCACCTGATCATGAAGCTTGTGTAATGAACGTCTACGGCTTGACCACAGCCCTCTTGTTCTCGTTCACATCGCAGATGACCATCGGGTACAGCGTTCGAGTCATTAATCCAATCTGTCCTGGTGCCATCATCCTCCTCGTTATCCAGACTCTTTTTAGTACGGTTGTAAAAGGCTTCTGGTGTGGAGTGGTCATCGCCAAAATGTCCCTGCCCAAGAAAAGAGCCAAAACCATTCATTTCAGCAAGAAAGCGGTCATCTGTCCTAAAGATGGCGCCCTCTGTTTGCAGATACGACTGGCGAATCTTCGCAAAACTCTGCTGGTTGGAAGCCAAATCTACGGAAAGCTGCTTAGAACCACAGTCACGGCCGAAGGCGAAACTGTAATCATGGACCAGATTAATATCAATTTCATGGTGGATGCTGGCAAGGACAACCTCTTCTTCGTCTGCCCTTTGACCCTATATCACATCATTGACAGGACGAGCCCCTTCCTAGAGATGGCTGTGGACAATCTGCAACACCAAGAATTCGAGTTAGTGGTATTTCTGGCTGGCACAGATGAGTCAACCAACTTCTCCTGCAATGTCCGAACATCGTACATCCCGCGAGAGATCATGTGGGGATACGAGTTCTTCCCCATCATCTCTCGCAGCAAAGATGGAACCTACTCTGTGGACTTCTCCGAGTTCGATAAAGTGGAACCTGTACCAACTCCACACTGTGCCATCTGCTTCCACAACGAGAAAGCCCATCACTTTAACCCAATAGACGGCATCGATAACCAAGTGTTTGAAGAAATTGAAGTCCCTCACCAGGGTGAATTTAGTCAGGAGGGAGGCCAAACATCGGTTAGTTTCCGAACTGTTCGCAAAAAATCCTAAATTTCTGTCCAGTTGTTTAAAACATCTACAAAAATGTTTGGTCCCACTTGttattaagtgtttttaatagatGTCTTGTTAcactttaacattaaaatgatctttttactgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216712 lncRNA upstream 162200 21918749 ~ 21918994 (+) True G159904
TU216704 lncRNA upstream 230653 21847617 ~ 21850541 (+) True G159896
TU216698 lncRNA upstream 328195 21752505 ~ 21752999 (+) True G159891
TU216671 lncRNA upstream 572361 21508595 ~ 21508833 (+) True G159868
TU216667 lncRNA upstream 589443 21491389 ~ 21491751 (+) True G159864
TU216731 lncRNA downstream 23576 22108075 ~ 22109190 (+) True G159919
TU216737 lncRNA downstream 42045 22126544 ~ 22127679 (+) True G159925
TU216758 lncRNA downstream 81422 22165921 ~ 22166376 (+) True G159936
TU216761 lncRNA downstream 93705 22178204 ~ 22178561 (+) True G159939
TU216784 lncRNA downstream 188198 22272697 ~ 22276949 (+) True G159961
XM_007250996.3 mRNA upstream 1436 22077478 ~ 22079758 (+) True LOC103026111
XM_022679743.1 mRNA upstream 19384 22000660 ~ 22061810 (+) True LOC103025486
XM_022679979.1 mRNA upstream 381473 21631760 ~ 21699721 (+) True LOC103031832
XM_007254477.3 mRNA upstream 619815 21457356 ~ 21461379 (+) True pex11a
XM_007254475.2 mRNA upstream 709610 21355119 ~ 21371584 (+) True LOC103034933
XM_022679980.1 mRNA downstream 6064 22090563 ~ 22094253 (+) True LOC111194835
XM_022679747.1 mRNA downstream 120658 22205157 ~ 22233055 (+) False LOC103027502
XM_022679746.1 mRNA downstream 120659 22205158 ~ 22233055 (+) True LOC103027502
XM_022679745.1 mRNA downstream 120659 22205158 ~ 22233055 (+) False LOC103027502
XM_007251016.2 mRNA downstream 149793 22234292 ~ 22260071 (+) True itpkc
TU216515 other upstream 1069400 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 1344145 20736598 ~ 20737049 (+) True G159728
TU216418 other upstream 1894275 20185516 ~ 20186919 (+) True G159666
TU215930 other upstream 3504757 18526386 ~ 18576437 (+) False necab2
TU216738 other downstream 63345 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 538340 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 768913 22853412 ~ 22854081 (+) True G160134
TU217233 other downstream 2034630 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 4664880 26749379 ~ 26755313 (+) False LOC103021732

Expression Profile