RNA id: XM_007251005.3


Basic Information

Item Value
RNA id XM_007251005.3
length 2046
RNA type mRNA
GC content 0.60
exon number 14
gene id LOC103028656
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22302354 ~ 22392575 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCGGTCACCCAAAGCTTCTTATCGGCAGCaggtggaggaagaggaggaggaggaagagtgagtgggtgagtgagtgtgagacagtcagagaaagagagaaagagcgagagagacacaCCCACCAGGGGCGCGCGCTCCCGTCTCCCACCTGCGCGCTCTCGCCTCCCCGTCACCACGAGCAGCGCGCGAGCAGCGGAGACCGATGGCCCGGGTTTTGGGGTGAGCGCGCGcggatgaggatgaggatgaggaagGTTTGGGACGGTGGGGTCGGCAGCGCGCTTCTGCTGCTCGCGCTCGCCGCGCACGCCCAGGTCCTGCAGGCAGTCGGCTCATTTGAGCTGCAGATCCACATGTGGCAGAACTCTTTGGGAATTctacagagcggtcagtgctgTGACCTCCAGGCCGGCGGGGGGCAGCGGTGTCCTCCTGGCGACCAGTGCGACACGTTCTTCAGGGTGTGTCTAAAGGAGTACCAGACCCGAGTGGCCCCCACGGGCTCCTGCACGTTCGGATCGGGGAGCACGCCCGTCTTGGGCGGGAACTCTCACACCGTACACCACCACGGACATGAGGGGAGCGAGGGCGGGCGCATCGTCATCCCGTTCAAATACGCCTGGCCGaaatCCTTCTCCCTGGTGATCGAGGTCCTTGACTATGACAATCAAACATCAGAGccaggtCAGGAGGAGCTGATCGAGCGCGTGCTGCTGTCGTCCATGCTGAACCCTGGGGAGCTGTGGCAGACGTACCGGCACCACGGCCGCCAGCTGAGTCTGGAGTACCGCCTGCGCTTCCGCTGTGAAGTCAACTACTACGGCCCGCTGTGTAACCATTTCTGCCGCGTCCGCGACGACTTCTTCGGCCACTTCGACTGCGACGTTTCCGGCAGCAAGGTCTGCAAAGATGGCTGGACTGGACCGGAGTGCAGGCAGGCGGTGTGTAAGCAGGGATGTAACCTGGCCCATGCATCCTGTAGCCTGCCGGGAGAATGCGAGTGTCACTATGGCTGGAAGGGGGATCTGTGTGACGAGTGTGAGACGTTTCCAGGCTGCGATCATGGTACCTGCACCGAAccgtggaagtgtgtgtgtgacaccaACTGGGGCGGCCTGCTCTGCGACAAAGatctgAATTACTGTGGAAATCACCAGCCCTGTAAGAACGGTGGCACTTGCATCAACAAAGAACCCAACGAGTATAACTGTGTGTGTCAGGATGGGTATCTTGGCCGCAACTGTGACATCGtggaaCATGCGTGTCTGTCGTCTCCTTGCGTGAACGGGGCGACGTGTGTGGAGGACCAGACCGGCTTCAGTTGTGCGTGTGCAGATGGCTGGACCGGACCCACCTGTGCAGATGCGGTGCTACAGTGTGACGCATCTCCATGTGGGCGCGGTGCCACGTGCCGAGAGACGCCGCAGGGCTTCCAGTGTCTCTGTCCTCCAGGCTGGACCGGCAAGACCTGCCAGatagATATGAATGAGTGTGATACAGGCATCTGTGTCAACGCTCGCTCCTGCCGAAACCTGATTGGTGGATACCTCTGCGACTGCCTGCCTGGATGGGTGGGGCCAAACTGTGATATAAGGAACAGCAGCTGCCAGGGTTCCTGTCTCAACGGGGGGCGCTGTGAGGGTTCACTCTGTGTGTGCTTGCCGGGTTTTACTGGTAAACACTGCCAGACAGCAGTGGGGGCATGTGAGAGCGCCCCCTGTCTGCATGGAGGACAGTGTGTGGAGCAGAAGGGTGTCAGGAGCATGGTCTGTAACTGTCCAATGGGATACACTGGAACTTACTGTGAGGTCGTGGTGGATATGTGTAATCCAAACCCCTGCCAGAAGGGGGGTGCCGTGTCGGAGCACAGAAGGAGGGTACATGTGCGCGTGCCCTGAAGGTTACTACGGAAATGACTGCATGAGCCTGAAGGACCTGTGCCATGGGCCGCATTGCCAAGTTTCGGAGCCAGGGAGTGGAGAGTTCAGCATGTACATGGTGCTGCTGGGGGTTCTGGCTGTGTTGGTGGCTGGCGGCTTCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216784 lncRNA upstream 25405 22272697 ~ 22276949 (+) True G159961
TU216761 lncRNA upstream 123793 22178204 ~ 22178561 (+) True G159939
TU216758 lncRNA upstream 135978 22165921 ~ 22166376 (+) True G159936
TU216737 lncRNA upstream 174675 22126544 ~ 22127679 (+) True G159925
TU216731 lncRNA upstream 193164 22108075 ~ 22109190 (+) True G159919
TU216905 lncRNA downstream 167261 22559836 ~ 22561902 (+) True G160051
TU216895 lncRNA downstream 184343 22576918 ~ 22582171 (+) True G160041
XR_002651265.1 lncRNA downstream 229771 22622346 ~ 22622773 (+) True LOC111194780
TU216970 lncRNA downstream 256061 22648636 ~ 22648919 (+) True G160096
TU216972 lncRNA downstream 257256 22649831 ~ 22650066 (+) True G160098
XM_007251004.3 mRNA upstream 14713 22282694 ~ 22287641 (+) True snrpa
XM_007251016.2 mRNA upstream 42283 22234292 ~ 22260071 (+) True itpkc
XM_022679747.1 mRNA upstream 69299 22205157 ~ 22233055 (+) False LOC103027502
XM_022679746.1 mRNA upstream 69299 22205158 ~ 22233055 (+) True LOC103027502
XM_022679745.1 mRNA upstream 69299 22205158 ~ 22233055 (+) False LOC103027502
XM_007235619.3 mRNA downstream 330145 22722720 ~ 22727446 (+) True rnf7
XM_007235620.2 mRNA downstream 335958 22728533 ~ 22736629 (+) True LOC103026853
XM_022679750.1 mRNA downstream 420960 22813535 ~ 22816398 (+) True LOC103027133
XM_007235622.2 mRNA downstream 499897 22892472 ~ 22893301 (+) True LOC103027426
XM_022679757.1 mRNA downstream 668000 23060575 ~ 23094876 (+) True LOC103030816
TU216738 other upstream 149569 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 1290560 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 1565305 20736598 ~ 20737049 (+) True G159728
TU216418 other upstream 2115435 20185516 ~ 20186919 (+) True G159666
TU215931 other upstream 3725917 18526386 ~ 18576437 (+) False necab2
XR_002651264.1 other downstream 230264 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 460837 22853412 ~ 22854081 (+) True G160134
TU217233 other downstream 1726554 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 4356804 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 4512669 26905244 ~ 26907627 (+) True G160919

Expression Profile