RNA id: XM_007251567.3


Basic Information

Item Value
RNA id XM_007251567.3
length 2689
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC103040340
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 551929 ~ 563776 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGGCTTTAGTGTGTCAgcatttcactctctctctctctctctctctctgctgtgtgGATCTGGAAGATGGAGTTAAAGGAGTTTTGCTTAACTGACAGCTTTCCATTCCTCAATCAGCAAAACAGTCTGTTGGACCCTTCATCTACTGATGACCCCCCATCTCCCAGAGAGACAACGATTAAGGCGGACCCCCTCAGCCCCCCGTTTACTGCCCCGTTCAGCCCCAGCAGCACCTCAGACAGCAGTGCGTACAGCCTGTTCTCTCAGGGTCACTCTCTGGACCCGGATTCacccagctccagcagcacagcCACCTTTAACCCCGCCCACTACAGCACAGAGGAACACAGTCTGCAGATAACAGCCCAAACACACCCCGCCCTCAGCCGGGACTACATCCCCAACCTCAACCCAGGACCCAAACGCCTCTGCCTGGTCTGTGGAGACTTCGCGTCCGGCTACCACTACGGCGTGGCTTCCTGCGAGGCCTGCAAGGCCTTCTTCAAGAGGACCATTCAAGGAAACATTGAGTACAGCTGTCCGGTGGTGAACGAGTGTGAGATCACAAAGAGACGGAGAAAAGCGTGTCAGGCCTGCCGCTTTCAGAAGTGTCTGAGAGCCGGGATGATGAGAGAGgGTGTGCGTATGGATCGTGTAAGAGGAGGAAGGCAGAAGTATAAAAGAAGAGTTGAGTCCAATCTGTCCGTCTTCATCAAAACACCCTACTCACATGCAGTCAAATCTGTCCGAAATAAGGTCATTTCCCAGCTGTTGGTGTCCGAGCCGACTCCACTGCGTGCGTCGCCTGACCCCTCCAGCCCGGACACAGACCTCAACACCCTGCTGACCTTATGTGACCTTCTAAACagggagcttctggtcatgatCGGCTGGGCCAAACACATTCCAGGGTTCGCTGCGCTCTCTCTGGTGGATCAGATGGCGCTGCTGCAGAGTGGCTGGATGGAGGCTCTGctgatgtgtgtggtgtggaggtCTCAGGGTTGTTCTCAGGAGCTTCAGTTTGCGGCGAACCTGCGGCTGAACGAAGCTCAGGCCCGGGCGGCTGGACTGCTGGACCTTTATACACCTCTGAGACACCTGACTGAGAAATACAGACAGCTGAACCTCAGCCAGGAGGAGGCCGTCACGCTGAAGGCCATGGCCCTCGCCAACTCAGATGCTGAGAACGTGGAGAGCGGGGAGGCGGTGCTGAGGTTTCAGGACGGTCTTCATGAATCCCTGCAGGACTACGAGAGCGTCCAGCATCCCGCTGAGCCTCACCGCGCCGGCCGGATCCTCATGACCCTCCCCCTGCTCAGACAGACCGCCCAGAGAGCCGTCCAGTGCTTCTGCCGCCTGCACATGGAGGGACACATCCCCATGCACAAGCTCTTCCTGGAGATGCTGGATGCCAAGATTTAGACCAGATCTCATATTGCTCCCTATTCCATACCATTTATCACACTACATGAGACACAAGGATCATGTGGTGTTTTACACTCATGTCCTAAAGAGGGAGCTGGTTGGAGTGCATCTTTAACAGGGTCAGAATGAGTGCAGATGGACATCTATACCACTAAAGCTCTGGAGGTTTTCTGTGTGTATGAATTAAAGATTCATCCACATTCAGCTCCAGGCTAAAAAGCACTGAAAGAGCTGCAACAAAGTGAACAAAACTTGAACAAAAGTGAAGGAAGTagaattttgtatttaattcatttacaaatgtaatatttaattgtagtagtagctttaatctaatttatttaagttataAGATAAGTTATGTTTAAATTgtcctgtttatttattctattgttTAAGAAATTAGGTTTAATTTTAGTGTTTGTGTTGGATATGGTTGATGTTTTTATCCatataacaaaacaatacaaaacaataaaactgcaTCAGaagcaaatatatttaaatgacagTATAATCACGCCACAACTCTTCagctttactatttattttgttttatttatttataaaatatgctTTGCATTTTGGCTATTTATAcgtaaataaactatttttgcaATTTTGATTTGTGTGTCTTTGTTAATCATTTGTTTCGTGTTGTTGATCCCATACAAAAGCAAAGTTAAGGAGTTTAAAAAAGgcatcttttaaaaaaacaaatattcacaaaaaattgcTTCATATGGTACTGTTTATAtacatgttatatatttatatatttttagtattagtCAATCATTTGTCAAAATGAAATGTATCAAAATGAACAAACATCATATTCATATTTCTTTTGCATGGAAACCAATGGAAaacaaaagaatgaaaaaatatgaatacaaaagaaatattaaattcaatACATATCAAAAATGCATCTATGGTAAAAAATGCATACAGCTTTCAGTATTTATATGATACAGGTCAGCAAAAGCATTCctcataataaacaatatttcttCTACTGCAGTAAacaagttaaatatataatatataaactttCACTGATGTTTCAAAATGATCTGCATAACACTGCTGGGGATGAACACATTTAGAGAGTGGGAATTTTGCTgtgaaaattgcattttttttttatttaacacagtggtggtgaatcatagccattttattatattgtattcaCTATCCAGCCCTCCCAGTGCATATAAAATGCTGTTGATAAAATAGTGGTAAagtttcta

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210557 lncRNA upstream 54789 493411 ~ 497140 (+) True G155290
TU210470 lncRNA upstream 152315 395765 ~ 399614 (+) True G155250
TU210471 lncRNA upstream 152315 395765 ~ 399614 (+) False G155250
TU210467 lncRNA upstream 152315 398076 ~ 399614 (+) False G155250
TU210468 lncRNA upstream 152315 398076 ~ 399614 (+) False G155250
TU210550 lncRNA downstream 24066 587842 ~ 590204 (+) True G155283
TU210572 lncRNA downstream 27898 591674 ~ 593996 (+) True G155300
TU210608 lncRNA downstream 131750 695526 ~ 703112 (+) True G155328
TU210615 lncRNA downstream 156519 720295 ~ 724186 (+) True G155332
TU210621 lncRNA downstream 185058 748834 ~ 749156 (+) True G155336
XM_022679438.1 mRNA upstream 14051 421528 ~ 537878 (+) True LOC103033531
XM_007251642.2 mRNA downstream 115219 678995 ~ 681903 (+) True LOC103034482
XM_007251569.3 mRNA downstream 140579 704355 ~ 713021 (+) True blvrb
XM_007251568.3 mRNA downstream 150133 713909 ~ 718705 (+) True sertad3
XM_022679465.1 mRNA downstream 363943 927719 ~ 952480 (+) True daw1
XM_007251581.3 mRNA downstream 539674 1103450 ~ 1106792 (+) True LOC103044527
TU210384 other upstream 398666 149347 ~ 153263 (+) True G155206
TU210867 other downstream 639965 1203741 ~ 1214663 (+) False LOC103036073
TU210855 other downstream 702044 1265820 ~ 1269379 (+) False G155491
TU210857 other downstream 702044 1265820 ~ 1268195 (+) False G155491
TU210859 other downstream 702044 1265820 ~ 1268195 (+) False G155491
TU211262 other downstream 2174585 2738361 ~ 2755112 (+) True G155776

Expression Profile