RNA id: XM_007251843.3


Basic Information

Item Value
RNA id XM_007251843.3
length 3170
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC103039409
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29398412 ~ 29401581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGCTGCTGAGAGAAAGGGAGGAGGGGCGCAAAGAGAAACAGCTCAGCCAAGCGTGCAAAACCGAACTGCGCGAGgagggacagaaagagacaCACCATCACTGCAGCAGATCCTCCAACATGGAGACTCCAAAACCACTCGAGACGAATGGATTCCATGCGACCACCACAGTGAACTAACTACAGcagaagaaaaggagaagaaaaaccACAAGAATTCCACTccacgtttttgttttttttttttttttttttgggaggaTGCACCAAAAAAGGAGTTTCCTGCATTGAGAAGGTTCCTGGAAAAacttttatctctttatctctgatTCCAAGGAATTCTGATAACAGCATTgttcagcaagctccctgattCCAAGTTTCCTTCACGTAAAGTCTGTAAAGTTTCCAAGTTCCCAGGTTCCTTTCTTGACCGGTTTTGTGATTATGGACAACTTCAATCCTACAGATTCTGGATGGTGGACCCTATCTTGCTGAGCTCTCTTCTTTTGGCATGTGGAGCACATTGGGATTTACGACCCTCACTCTTGGCCTAATAAATGTGGACGAAAGCTGACTTGACAAAGTCGGTGCATACCAGTGTGAGCTGCAGGGACCCCCCAGGATGGAGGCCCCATGTGGCCCCCCAGCGCTGtccttcttctcctttttcatCTTCGCCTCCCTCACGATGACACTGAATGGCCAGTTGGTGTGCTGGCACGCCTTGCTCCGGTGCCACCAGGAGAGAGATTGCGATCTGGCCTATAATCAGTACCTGCTGGCGTGCGAAGGAATCTTGAGGGGGACGAGGCGGCAGTGCCCCAGCCACTGCATAGGTGCCCTCGTCCGCCTCAACCAGACCTCCAGTGGGCCAGAGCTGGAGACCTGCAACTGCGGGCAGGATGAACTGTGTCACAGGGCCAAGAAAGCCATTGAGCCGTGCATGCCCAGGACTCACTCTGGTGGAATGGGCTGCACTGAGGCTCGTCAGCATTGCGACGAAAACCCCAGTTGCAGGTCATCATTGACTGGTTATCTGTCTTCCTGTGGTCAGCTTTTCAATGGCAGGAAGTGCTCTGCCCGCTGCAAGGCCACTATTGAGGAGCTGCTGTTCATGCCAGATGGTGCCATGCTGGACAAGTGCGTATGTGATGGAGTGGAGAGGCCTTTTTGTGAGGTGGTCAAGGAAAACATGGCCAAGCTGTGCTTTGCAGGCGAGCGGGGAGCGCACACCGACCAAGACAGCCTGGACGACGTTTACGAAGATGAAGATTACGAAGCTAAAGGCGAGCGGGAGGTGGATGTGGACGCTGTGGTGCAGTATTCAGGGGCCGAGCACTTCTCAAGCCATATAGTTCTGATCTCGGGGTCAGTCTTGCTGACTTTTCTTAAGGCTTGACCACCTTGACCCTGGCTCTTCTCCATATGGCTAGCTGGATGTGAAATAAGCTAGATGACTGAGCTGATCTAAAGGGTGGCCAGTACTAAGCTGTGATGCTTAAATGGATGGAGTTTTGCTGACAGAAACTCAGAAAATACTTCAGAGTGCTGCCAAAGGGACAAATAAAGGGCTACAAGCACAAAAAGTACAAGAATTGGTACATTTCTAGGGCATTATCCAAGCCTTTTTAGGGCTTTTTGGCTATGGACTTaagctaaaaagctaaaaaatgtcattttaaaggATCGTTTTAATGGAGTTTTGCAATCCTAGAGTGGATTTCCTTTTGTATAAAAGACTTAAGCTAAGAAATTGAGAATTTATTCTCCCAGAGTGAAGCTAAAACCTCACTGAAATATGCCTTAAAGTGGAATATTGCAGCATTCCTCggtgtaatgtgttttttttgtgtcttgttAATGGTTCACTACCACCAGCagcagtactgtactgtaaatttGAATGGTATTATTGAAGTTACTTACAAAGAGCAAAAAGAGGAAAATCACTAACTAAAAACACACTTAGCATCCAGAATTTGAATCCAGTGAGCATTTGGATGGAATGGTTGGAATGCTTGCAGCTTCAAATTGGTTTTATAGTCACATAGTCACACATCTCAAGCATTTTTCCAAGAAATTCTTCAACGGCACATTGGCTTCTAATATGAGTTTGAGTTGAGTCGAGTTGTGTTGAGTTTTCCTACAATATCCAGAagttagttaaaaaataaaaacacactgaactatTCCTTTAAACACCAGTAATCTTCGTGGCCTCTCTGATAGAGAGCTGTAAGCTTGATGAGAAGACTAAGACAAatgtctccctctctttctctctttatttctctccttcTTCGTCCTCCCCTTCTCACTCTCACTATGTTTTGTTTCACCCCATTGCTCTCTAAAGTGTCTCTTTTTTAGTAAGACGTAAGACAAACAGTGATCTCGCTCTCCGGGTGTTTGCAGACCTCTTGTTGCCCACACGCTCATTGTGGTGACTATTACACTTCAAATATTTGCAGTGGACGGCCAGAGAAAAGAGCAGGTTTCAGGATCAAGTTGTTAAATTAAGTGGAGAGGCTCTTCACAGGCTGCTAAAATACCCTCCCCCTCCCCGAGCACTCACTCtatattctctctcactctctcatttcaCTGAATCATCCCCTGGCATGAcctctttcctctctttttttctctccctccccccATTCCTAAAGGAAATGCttgatctctctttctctctctctctcttactctctctctctccattttttcTTCCTCTGCTTCTAAGCTAGGCCATTGTTTGTGCTCTGGAGTAATTGGCTTTTATGAAATTTCTCTTGCACATGAAAAGCAGCAGAATCCCTCGTTCCCTGACTTTAAGCGGCTGCTGACTCTTGGAGAGAAACAGCCTTGTTTggagaaaagagaaacaaaTGAGTGAACTTTTGGTAGCTTCTTCTGAacgaaagaaaaagaaaatacacttAATACACTCAAATTCAATTCATTCCAACATCAGTTACGGACATATTGTATTCTCTAATGTGGGATTACCCATATTAAGAGTTTTAACTTTgtaataattttagttaaaacaatgATTGAATGTCGTAAGGTCTTTGGTTGAATTGCCACAAACATTGTATGTACAGAAagcaatatatttatgttttgaaAATTATGAAGGAATAAAATTGTGAATGTGAATCGTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218716 lncRNA upstream 44121 29333111 ~ 29354291 (+) True G161425
TU218704 lncRNA upstream 183677 29210264 ~ 29214735 (+) True LOC111194801
XR_002651276.1 lncRNA upstream 185536 29210362 ~ 29212876 (+) False LOC111194801
XR_002651277.1 lncRNA upstream 185536 29210368 ~ 29212876 (+) False LOC111194801
TU218703 lncRNA upstream 190122 29207963 ~ 29208290 (+) True G161417
TU218780 lncRNA downstream 81933 29483514 ~ 29490820 (+) True G161476
TU218789 lncRNA downstream 100539 29502120 ~ 29532246 (+) True G161484
TU218809 lncRNA downstream 218816 29620397 ~ 29639626 (+) True G161502
TU218810 lncRNA downstream 223442 29625023 ~ 29646905 (+) True G161503
TU218816 lncRNA downstream 255109 29656690 ~ 29657488 (+) True G161508
XM_007251842.3 mRNA upstream 6446 29371065 ~ 29391966 (+) True LOC103039106
XM_022679827.1 mRNA upstream 90499 29219466 ~ 29307913 (+) True csk
XM_022679826.1 mRNA upstream 198201 29199449 ~ 29200211 (+) True LOC111194800
XM_007251840.3 mRNA upstream 239227 29152296 ~ 29159185 (+) True LOC103038575
XM_022679824.1 mRNA upstream 255222 29133628 ~ 29143190 (+) True LOC103023184
XM_022679828.1 mRNA downstream 47569 29449150 ~ 29473681 (+) True LOC103023825
XM_007251847.3 mRNA downstream 75104 29476685 ~ 29486014 (+) True tm2d3
XM_022679832.1 mRNA downstream 120196 29521777 ~ 29598907 (+) True lrrc49
XM_022679829.1 mRNA downstream 204476 29606057 ~ 29715602 (+) True thsd4
XM_022679830.1 mRNA downstream 204476 29606057 ~ 29715602 (+) False thsd4
TU218604 other upstream 281617 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 639405 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 773627 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 2281201 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 2490785 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 1473457 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 1473537 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 1473537 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 2667281 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 2834735 32236316 ~ 32295029 (+) True G162032

Expression Profile