RNA id: XM_007251852.3


Basic Information

Item Value
RNA id XM_007251852.3
length 2092
RNA type mRNA
GC content 0.52
exon number 5
gene id kctd15
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 35549892 ~ 35603715 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taagagAATGAAAATGTATGCCTCGCTGAAAGCGCCCAGGGAAACGTTACATCAGACGAAACGACACCGATTAAAATCGGCTTTTTGGCTGCGAGTTGGTTGAACGGCGCGCCGCTCGCGTGATGCTGCTGCCCGCTTCCCCCCTTCGCTTCCCGGCCACAAGAACTTCCAACCCCCGCTGAAGCGAGTCCCACTTTCCgttttttttcactctcttttttggcggaaaaatagaaaaacacgaagaaaaaaaaacgcaaacACTAATGAATCATCTGAATCATCATCCGAGCAGGGGAGAATATCACGTTTTCATCTTTTAAGAGggatagaaaaaataaaaaaataaataaattagcctGGGAGAGAGTGGGGCTGAGCTAATTGTAGCCTAATCCTTTTGCCCCAGAGGCGTGTGGGCAGCCCGGAGCAAGAATTCAGTTTTAGCTCCTGCTCTGTTATTTAGACACGGCTTTATTGgctttcttttttccccagcaGTTTCATTTTTGGgggcttttttattattttctgtggGGGCAAAGATTCTGAAACGCGGATCCAGGCAGCAGAACGCCAGAACAATAAAGTATTAAAGAAGATATAAAAAGCAGCCGGTTGGGGGAGAGCTCCGCGCCGTGTGAAAGGAAGGGAGGAGCATGTCGCGCCTTTCTCTGAGCCGCTCGCCGGTCTCTCCTCTGGCCGCGCAGGGCATCCCTCTGCCGGCGCAGCTCACCAAAGCCAACGCGCCCGTGCACATCGACGTGGGCGGACACATGTACACCAGCAGCCTGGCCACCCTCACCAAGTACCCGGACTCCAGGATCAGTCGTCTCTTTAACGGCACAGAGCCCATCGTGTTGGACAGTCTAAAGCAGCACTACTTCATCGACAGGGATGGAGAGATTTTCCGCTACATCCTCAGCTTCCTCAGGACCTGcaagctgctgctgcctgacGACTTCAAGGACTTCCACCTGCTGTATGAAGAGGCGCGGTATTATCAGCTGACTCCCATGGTGAAGGAGCTGGAGCGATGGAAGCAGGAGCGCGAGCAGCGGCGTCTGGCCCAGCCCTGCGACTGCCTGGTGGTGCGTGTGACCCCTGACCTGGGCGAGAGGATCGCCCTGAGCGGAGAGAAAGTCCTGATCGAGGAGATCTTCCCCGAGACCGGAGACGTCATGTGCAACTCGGTCAACGCCGGCTGGAACCAGGACCCGACACACGTGATCCGATTCCCTCTGAACGGCTACTGCAGACTCAACTCAGTACAGGTGCTGGAGCGTTTGTTCCAGAAGGGTTTCAGCGTGGCGGCATCATGTGGGGGCGGAGTCGACTCTTCTCAGTTCAGCGAGTACGTCCTGTGTCGCGAGGATAGGCGGAGCCAGTCCATGAACACGCCCAACAGGATAAAACAGGAGCCGCTGGACTAGAGGCCACACAGACTTCCCATCCGAGACTTAACACAACccagttaaacacacacacaaacacattcacacacacacatttacatacatttacactcactgtgtgctcacacaacacacacacacacatttaaacacatgtaCAGACTCGGATACAGATGCCTGTTAGCTTCGCCGGCTCTGAAGTGGAATGTAATGTATACAAACACAACAAACGAATAAAAAACAGCGAATTCCTCACCTCACCGAACTCAAAAGAAACCCAAAGAACTACAGTGTGAACTACAGAGCGAACTACAGAAGGGGCTCAGCCAATCCTGCCTGGTGACCAAACTAAAAAGAACAATGACCGTGAGCCGcccctctctctcagtgcagtgTGAACCGGTGTGTTCTCCTCGTCTCGTGTCGCCGTGTGAGgcatgtgtgtggtgtttgtgcgCTGGTTGCTCAAGGCTGGACTCAGAAGAGAGCTGGACTTCCAACAACCAACACGAGAAACCAAGAAAACTCTGAGTGAAGCGAAGCAAAGCGCGACGGACTGACTCAGTGAACAGGGGGTCCGGCTTCTATACATCGCCAAACCGATTGTTTCACGTTAAATActgttgtttataaaaatgcagcGTTTCCTCCCAACATGATGTACACAATCATTAATA

Function

GO:

id name namespace
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0051260 protein homooligomerization biological_process
GO:0044335 canonical Wnt signaling pathway involved in neural crest cell differentiation biological_process
GO:0060037 pharyngeal system development biological_process

KEGG:

id description
K21754 KCTD1_15; BTB/POZ domain-containing protein KCTD1/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220248 lncRNA upstream 29101 35498034 ~ 35520791 (+) True G162593
TU220319 lncRNA upstream 103551 35441683 ~ 35446341 (+) True G162635
TU220288 lncRNA upstream 208957 35340227 ~ 35340935 (+) True G162620
TU220285 lncRNA upstream 230245 35317946 ~ 35319647 (+) True G162617
TU220276 lncRNA upstream 314804 35234290 ~ 35235088 (+) True G162610
TU220439 lncRNA downstream 204226 35807941 ~ 35814793 (+) True ss18l2
TU220448 lncRNA downstream 224305 35828020 ~ 35828825 (+) False G162746
TU220449 lncRNA downstream 224305 35828020 ~ 35828825 (+) False G162746
TU220450 lncRNA downstream 224305 35828020 ~ 35828825 (+) False G162746
TU220453 lncRNA downstream 224305 35828020 ~ 35828825 (+) True G162746
XM_022679896.1 mRNA upstream 37115 35067318 ~ 35512777 (+) True chst8
XM_022679895.1 mRNA upstream 710865 34807506 ~ 34839027 (+) True pepd
XM_022679894.1 mRNA upstream 1200012 34319213 ~ 34349880 (+) True LOC103044586
XM_022679893.1 mRNA upstream 1234668 34300018 ~ 34315224 (+) True mios
XM_007242176.3 mRNA upstream 1234668 34300018 ~ 34315224 (+) False mios
XM_007251853.3 mRNA downstream 182615 35786330 ~ 35803285 (+) True lsm14a
XM_007251854.3 mRNA downstream 182615 35786330 ~ 35803285 (+) False lsm14a
XM_007251855.3 mRNA downstream 182615 35786330 ~ 35803285 (+) False lsm14a
XM_007251858.2 mRNA downstream 204150 35807865 ~ 35811902 (+) False ss18l2
XM_022679900.1 mRNA downstream 285239 35888954 ~ 35909612 (+) True gpi
TU219593 other upstream 2830617 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 3254863 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 3401702 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 4671580 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 1150470 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 1806277 37409992 ~ 37411969 (+) True G163105

Expression Profile