RNA id: XM_022679829.1


Basic Information

Item Value
RNA id XM_022679829.1
length 6121
RNA type mRNA
GC content 0.45
exon number 18
gene id thsd4
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29606057 ~ 29715602 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgtgtgtgtgtgtgttggagctgTTGCTGGTCTCATGCTCAGGGAACTGTACGGATCAGAGTCATGGAGGAGGTGAAGGTGGGGGGCTGCAGGGGGTCTGTCTGCCTTTTTATATTTGCTGTAAACTTTAAATCAGCTGGAACTGAATGAATAACATCTCCATTAGAGGAGCGCGCGCTCTGGAGGAACCGCAGGCACGGTAGAGCTGCCCACTTTCTCTCCAGTATGAGCAGAAGAGTCTCCATGGTGAGTTTCGCCATGGTTATGGCCCTGCTTTGGTCAATCCCCACTGACTGTCAGCTCCCAGCAAACCACAAGAAGGTTTCTCCTAGGTCAGAATCCCAGCCGGGAGTTAATGATGACGTCCCTCAGGGGTCGTGGGGCTCCTGGGGCCCATGGGGTGAATGTTCCCGCTCCTGTGGTGGGGGGGTCCACCAGCAAACGAGGCCGTGCCTCCCAACCGTCACCCCTCTAGCTGCAGCATACACTCCCAGACAGGCTCCTCATGTGGGGCACCAGGAACCGGGACACGTGGAATCAGCCTTGAGGCCCTCTGTGCCAGTGCATCGCGGGAATACACACCTCACCAGCCGTGGGCAGCCTAGGAAGCAGCAGAATGAAGTACGACCTGGGCGACGgcGGAGCAGCAGCCGCATCACTCCTGGAATGTACGGCTACGGGAAGATGCCGTATGTGATGTCCTCACAGAGCGACCAAAATATACACACCAACCTGCACCAGTATCGCCCCCCATCCGACTACAGACACCACAGCTACAgacgacagcagcagcagcagcagctgaacaACAGAAATACTCACCAAATCACCCACCACAACTCTCACCACAACACCAACCAGCAGACCTGGGTTCCTTTATATCAGCCCAGCTCTGGCCTTCAGAGTCAAACCGAGCAGCAGTATCCTACTGGCACTCAGACGTCAGGGTCCAGCCAAACGTCCACTCAGACCAGACCCTACAACCCCCTGCCAGCTTCCTCCTGCTCCGGAGAGTCCAGCCTGTACAAGAAGTGCAACACAAATCCCTGTCCTCCAGCCAGTAAGCCTGTCAGAGACGTCCAGTGTTCCTCCCATAACAGCCACCCGTTTATGGGCCGACTCTACGAATGGGAACCTTTCAATGAGGTTCCTGAAGATCAGCTGTGTGAGCTAAACTGCCGGGCGATTGGGTACCGCTTCTACGTCCGGCTGTCAGAGCGGGTCATCGATGGGACTCCATGTGGACAGAATGAGACGTCCATCTGTGTGGCTGGGAAATGTCAGagTCCTGGCTGTGATGAGTTCCTGGGCTCGGGGAAGGAGATGGATAAGTGTGGGGTGTGTGGAGGGGATAACACCGCCTGCAAGCTGGTCTCTGGCATGTTCCAGCACAGCCTGTCCAAAGTGGGCTACCACAAGATCGTGGAGATTCCAGAGGGAGCTACCAAGATCAACGTCACCGAGATGGTCAAGAGCCAGAACTACCTTGCCCTGCGGAGCCGTGCTGGACGATCCATCATAAACGGAAACTGGGCCATCGACCGGCCAGGAAAGTACGAGGGAGGGGGGACCATGTTCACATACCGGCGGCCCAATGAAATCAGCAGCACAGCTGGAGAGTCCTTTCTGGCAGAGGGGCCGACCAATGAAGTCCTGGACGTCTATATGATCTACCAGCAGCCCAATCCTGGagtgcattatgaatacatCCTTCCATCAGAAAACTCAGTTTTGCAGGGCAGTGCAGATGATGCAGGTAACACAGTGACCAGTGAAACAGGATATGATCAGTACGGTCGGCCGTCTCAGGAAGGATACGAACAAGGAGGAGGACACAGGTACCCTCCTCACACACCCGACAACCAGGTACCTGCAGCCCAGCCCCCacgcagacagagagagcataACTGGAAACTTATTGGAACAACTGACTGCAGCGCCTCCTGTGGTAGAGGTAGCAGGTATACTGTGTTTGGCTGTGTTCACCGCATCACTCACGACCGTGTGTCGGACACTCTGTGTGACAGCAGTACCAAGCCCAGCGCTCAGGAGGAGCCCTGCAACGTCCAGCCATGCCCTGCATTTTGGGATATTGGCGAGTGGTCAGAGTGCAGTAAGACGTGTGGCCTCGGCATGCAGCACCGTCAGATCCTCTGCCGCCAGGTTTACGCCAACCGCACCCTCAACGTGCAGTCCAGCCGCTGCCGCCACCTCGAGCGCCCCGAGAGTAGCGGCACCTGCCAAATGAAGATCTGCAGCGAGTGGCAGATCCGCTCCGAGTGGAGCCCTTGCTCGGTGCCCTGTGGGGTGGGTCAGAGGTCGCGGGAGGTGCGCTGCGTCAGTAACGTGGGTGATTTTGTGGAGGATGAGGAGTGTAACATGAAGCTTCGTCCCAGCGATGCGGAGAACTGTGACATGGGACCGTGTGCAAAGAGCTGGTTCCACACAGACTGGGCCAACAGAtgctctGCAGAGTGTGGGATGGGTGTACGGAGTCGTAGTGTGGTTTGTCTTATTAACCACATCAGCAGTCTGCCTCTAGAAGGCTGTGGGTCAGAGCGCCCCCCAGAGGTTCAGGCCTGCAACAACGGGCCCTGTGAGAGCCGCACTGAGTGGTTCACTGGGCCGTGGGGTCAGTGCTCTGCAGAGTGTGGAACAGGCAGCCAGCAGAGGGCTGTAGTGTGTCTGATGAAGTCGGATGAAGGATATAATGTGATGCCTCCGTATGAATGCTCTTCCTTGGACAAGCCCCTCGGTCAGCAGAGCTGCCACATGAAAGCCTGTGGAGCCAAGTGGTACTACACGTCCTGGAGTGCATGCTCAAAGACGTGTGAGGGGGGGTTCCGTGTACGAGAAGTGCGCTGTCTCTCTGATGAAATGACGCCGAGTGAGGGATGTGAAGAAGGACTGAAACCAGAGGAGAAAGAAGAGTGTAACACTCAGCCGTGTGTTCCACAAATAGATGAAAACTGTCGAGATAAGTACTTCAACTGTAATGTGGTGGTCCAGGCGCgcctgtgtgtgtataactACTACAAGATGGCGTGCTGTGCCTCCTGCACACGCGTGGCACAGCGACAGTCAGCATCCAGAAGCTACAGATAGGACTGAGCCTCTGGGAGCTTCACCCACCTCCAGCCTGCCACTAGAGGGTGCCATGAGCAGAGAAACAGCATCACTCCGAGAGAAGCAGCTTTGGGGGCTGTCAAACAAACAATGGGGTCACGAGGAGAAAATAATTTTGACGCAGCTTTATGGGAACTGAAAAAGTTGGATAACGCTGTGAAGGAACTTTCTAGAGGACTCGTTTTTGGCCGAGGGTTCTGACCTGGGACTTCAGAAGCAGAGCGTCTTGGATTTTGATTctcctggatttaactaagtgtAGTCGGTCATGGGACACTTGTGTAAGAGTGATGACCACAGTGACTCAAAGTGGCCCATCGGGGTCATTAAAcggtgcttttttattattaactcaAGGTGAAGAATCTGAGAGATTCTTACAGAATTTCAcagaacatgtgtgtgtgtgtgtgtatatagtgatCTACAAATGCAAACCCAGCAAATCAACAGCATTCATACCTGAAAATATAATTCACTGATtaaatacaacagaaaaaactacagaaaagctgccaaaccttttttttcaggCATTCTGCTAATAAGCTCTGAcgaatctgatttttttacttCAGGTTCTTAAGTTATGATACTTACTTAAGATACTTACATACCCAGCCCAGTTATTGGTAATCAAATGTTTaacccattcattcatccatccgtCTAATCAGCTTCTTCCTGATACAGAACCTAACCTGAAATTATTGGGTGCAAATTAGAAATACCCTCTGAAAGGTGCTTCATTCAATCACATGGTGCCACACATATACAATCACTCACAATTTTAAACCTAGTGCTCATTTTAAATCTTTTAGAAGCTGTACAAAACTACTGTGACAAAAACACCCAAACTCATAATATTATaatgaaattatataaaaattaagctttttaaacaatttctgaaaattaaattaatcagtTGATCCAACTAGTCAAAAACAGACTTATTCAGttgaaattataaattaaaatgtttttatattaatttttcacAATAACCATTTTTACAAATGATGACAGAATAATTCCACATTAGTGATCTTTATTGCATTCAACCCACAGCCACACTCAGCGCATCAAAATAAGCTGTAATCTGTCCTACAGCCTTCAACACTATCTAACCATATAGGGGATGGTAGTATGGGAAGAACACTACACAGTAATGGTGAATAAAGGGAAAAGACACACCCAGTACTAAAATACTATCTAATATCAAGGTCACACTGCTCAAAAAGTGTACCCAAAATTAGTTCTGGGCACAGCCCTGTCAGATCATACTAAATCTATAAATATAAGATAATTCTATGTGCAAATTAATTAGATTGTGTAtgcaaaaaagtattaaaaaacactagATTCATTGGGTTTCATACCAGCATATTTTCTCTTTATGTTAGACCAACAGCTTCTCAAAACCGTTTTCTTTAGTGCAGACACATAGagaacacacaccacatacCCCCACAGACAGTGACTGAAGCAGTGATCGAACCCGCATAAAAAAAACGTAGGTTACAcgggacataaaaaaaaaaaacgtataagCTTCCAagtctacactctaaaaaataagGTGAAATATGTGATTTAAACCAAATTTTAGTTATACTACACGTGTCAAAGCTCTTTCTACAATGTTGGTTTATAAAGCTTTCCTATaaggctcctggtaccatatatttgcatattgggtgtggcctctcccttacttaccatctttgtgttctATGTTGCTCAAAACTACCTTATCTTAGACATGCGTGAGACATTGGTGAGATGTGTTTCTTAATTGCCAATTCTCTATGTTGTAGGACTGTGGTTGTTTTCTAGCTTTGGCTCAGCTAAACCTGAATTtcaagttttttatatatttaccagTTATTCAAGTCAAAATAATAAGTGAATTAAGTTTAACCTTTTTTATAGTCATCTGTTGTTTATCATGAAACTACAGGTGCCATGCTAATACTCCTAAATTCACTACGGTTCCCACAATACCATTCAGTTCCAATATCTCACAACTTCTTAAATTTAGTATTTGTGCATACTTTGTATTTTCTATGCAACAGCATGCACTGAACCTGGTCTGTTACACTATTTTACtcttcagtgtttttcaatttcatatttttaccaAAGGGGTTGCCAAATCCTCAGATTTTACACAGAAtggatttaatataaaaataaaaataaaagtttttttttttaaatcagtaataCTAATGATACTGCATACTGTGTTTCTTATCTACATTGAACATCCACTCTAAAACAAGTCTTATTAAAAACTGATATACCAAAATAATCCAGATAATGATGATACTTTCAGTGTGGATTAAATAGATCTTTATTTCCAggttatgttttatttgtacattaattccagttacttttttttttaaagtatataacAATGTACAGGGTCATTCTTATACCCTCATAATGTCAAAGAAGCCCCTAAGAATTAGAAAACTAGGAAGcagattttactatttttttttttttttttgtatctcagGAACAGAGTCTGATTTTCAGGTTCATATACAAGCATTTCTTTTACAGACAGACGAGCAGCTGAGCAGAAAGCTAGTATTCAGATCTGTACCGGCCTTATAGCAGCTATAACATAAAGCCTTTATGACTATTCAGCTTCTTTATCATAACGATAGCTGAGATTTAGAACAGATGTACTGTACCTGTTTATAAGGAGAAAGTCAACATAGGAGAACTGAGGTTTTGCAGCTGTATTGTATGTATAAGCACATAGACTGACAGCTATACAGTGTATAAACATAACCACTAATTtatatttctgtatgttttgtttaattcagTGATATTTATATGGTGAAGCTATTCAGACATGTTTACAGTTGTAATGGTTTGTTTATCACAACACTCAGCCTCATCATAATCCATTCAGagaatgttttactgttttatagaACCGATTAAAGCCTTACGATTGAAAAATCAA

Function

GO: NA

KEGG:

id description
K23377 THSD4, ADAMTSL6; thrombospondin type-1 domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218789 lncRNA upstream 73811 29502120 ~ 29532246 (+) True G161484
TU218780 lncRNA upstream 115237 29483514 ~ 29490820 (+) True G161476
TU218716 lncRNA upstream 251766 29333111 ~ 29354291 (+) True G161425
TU218704 lncRNA upstream 391322 29210264 ~ 29214735 (+) True LOC111194801
TU218822 lncRNA downstream 8292 29723894 ~ 29724121 (+) True G161511
TU218854 lncRNA downstream 98019 29813621 ~ 29814942 (+) True G161532
TU218855 lncRNA downstream 98019 29813621 ~ 29816600 (+) False G161532
TU218858 lncRNA downstream 98019 29813621 ~ 29816600 (+) False G161532
TU218859 lncRNA downstream 98019 29813621 ~ 29816600 (+) False G161532
XM_022679832.1 mRNA upstream 7150 29521777 ~ 29598907 (+) True lrrc49
XM_007251847.3 mRNA upstream 120043 29476685 ~ 29486014 (+) True tm2d3
XM_022679828.1 mRNA upstream 132376 29449150 ~ 29473681 (+) True LOC103023825
XM_007251843.3 mRNA upstream 204476 29398412 ~ 29401581 (+) True LOC103039409
XM_007251842.3 mRNA upstream 214091 29371065 ~ 29391966 (+) True LOC103039106
XM_022679850.1 mRNA downstream 13748 29729350 ~ 29734672 (+) False LOC111194806
XM_022679849.1 mRNA downstream 13755 29729357 ~ 29734672 (+) True LOC111194806
XM_022679987.1 mRNA downstream 25459 29741061 ~ 29743027 (+) True LOC111194842
XM_022679843.1 mRNA downstream 160172 29875774 ~ 29884606 (+) True LOC107196975
XM_022679858.1 mRNA downstream 174291 29889893 ~ 29898429 (+) True LOC103032796
TU218604 other upstream 489262 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 847050 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 981272 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 2488846 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 2698430 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 1159436 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 1159516 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 1159516 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 2353260 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 2520714 32236316 ~ 32295029 (+) True G162032

Expression Profile