RNA id: XM_007254465.3


Basic Information

Item Value
RNA id XM_007254465.3
length 2202
RNA type mRNA
GC content 0.44
exon number 9
gene id arrdc4
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 20666244 ~ 20674227 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aacgttttttttgtttcggGGCGTGGCGAAGAAGCTAATACAGGTGATAGAAGTGTTATATTGCGCAGGAGAACGCGCTTTAAGTGCTTAAAATGGTCGATATTTGTATTactttaagagtttatttgagTATTCACACGGGAGGAAACGCCCACAAAGCTCTGGGCGGCTCGCTGGGATTTATGTACGGGTTCATACAGCGCTTTGGGAAGTAGCCAACCTAGTTTGTGAACCCAAAGATGGCTGACAAAGTGAAAATGCTGGGCCTCTTTTTTGACAACGACCAGGGGAAAGGGTACAGTTCTGGGGAGGTTGTGTCTGGACACATCCTCATAGACCTTTCTGTACCTATTCAAATCACAGCCATCAGACTGCACGTCACAGGATGTGCCCGAGTGGGTTGGATTGATGGATCACAAATCCGAACTTTAGGTGCTTTTAGCTTAGTCTCTACTCCTTcatctttatttcagtgtgctGAAGAGAGGGAATACCTCTGTCTGTCAAAAACACTTCTGGAAGCAACAGATAATGATGGACTCATGCTTGAAGAAGGGCGGCACGAGATTCCCTTTGAATTGGAACTACCTCAAAGACACCTTGTGTCCTCTTTTACTGGAAAGCATGGCAGTGTTTGTTATTTGGTCAAGGCTGTTCTGCAAAGGCCAAACCACCACGATCAACATGTATGCAGAGAGCTCCCAATCATCAGCCATGTTGATGTCAATTCTCCAGAATTGGTGTGCCCTGTTTCAGAAAACAATGAGAAGATGGTTGGCCGTTGGATCTTTGCTTCAGGTCCTGTCTCCCTGAAAGTCAACATAGAACGTACAGGTTACAATAATGgagAGTTAGTTCCAATCTATGCAGAAATTGAGAACTGCTCCTCTCGACTTGTCATGCCTAAGGTGGTAATATACCAGATCCAGACCTACAAAGCCAAAGGAAAGACTATAAGCTGTAAGCAGGTAGTGGCCAGTGTGAGAGGTAATCACGTCCCGTCTGGCTGCTCCGTCACATGGAACGGAAAAACACTGAAGATACCGCCAGTCTCTCCTTCCATCCTTAATTCTGACATCCTGAGAGTGGAATACTCGCTAGCTGTTATAGTTCAGATACCAGGTGCCAAGAAACTGAAGGTGGAGTTTCCCGTCGTGATTGGCACTACTCCCTACAATGACTTTGCCAGCCGCAGCCTTAGCATGATCAGTGGATTCAGCACCGGCTGGCTCCCTCTCACCCTTCCAGACACACCTGAAGCTCCTCCAAACTATGCAGATGTTGTGCCACAAGAGGAGTTTGAGCAGCACCGCCCACCTGTTTCACCTTCTCAGCAGTCAGAAGAACTGGAGAGGCAGCCAGCCAGCCAAACCTTTTCTTACATTCATGAGTTTCGCTTCCGTCCACCTCCACTGTACTCAGAGATTGACCCAAACCCAATGGAATATCAGACAGTGTTTTCTGTCTGAGGGAGGTACCAAACACATGGATGCCAAGGACATTTTATGTATTGCTGTTCCTTATTTGAAGGAGACCAAAGTAAAAACATCACTTATTTGGATTAATGGAGACTCGGATGCTGGGAACACATTATGTAGACCCATCTGATAGACCATCTAAAAGAGTATATTAGATTTGGATTAGATTTACCAAGAGGGATGTATTCTGTAACCAGTAactgtgtatgtacagtatgtttacaGTAGCTATAGCAGTCTATAGTGCCTGTGGGCTGTGAAAGATCattgaaaaacacacacacacacacaaacaacaaaagcTTGGGTACCTGTTTACATTTTGAATTGTTCTAGAGTGTGTGACTAGAGTGACTGTTGCTGTCATTGACAAAGAACAAAACctctgtttactttgttactacTGTTTCCTTTGAATACCTGCTGTGAGAACATATACAGTGCAACAGTGCTGTTCTCTGAATACATGCACTAAATCAAAAAGCACTTTACATGTATATGGGCTTTACATTGATTTGATTGATAAGCCCTTTGCACTTGGATTTAACTGCTGCTCAACACTACTTTTAGTTCCACTTTATCCAATCTGATGTTAAAATGTTCTGATTATGACTTCACTCACAGTGCCTTGCTGATCTCAGAAAGTATAAATACCACCAGCTATGTGAATTTGTAGTTCTCAGAATTCTGTTGGTCACATTCATAAACTTGGTTCACTACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216474 lncRNA upstream 135519 20530473 ~ 20530725 (+) True G159709
TU216471 lncRNA upstream 210080 20455811 ~ 20456164 (+) True G159706
TU216470 lncRNA upstream 217461 20448458 ~ 20448783 (+) True G159705
TU216429 lncRNA upstream 409031 20256507 ~ 20257213 (+) True G159677
TU216412 lncRNA upstream 452718 20207227 ~ 20213526 (+) True G159662
TU216497 lncRNA downstream 77888 20752115 ~ 20752674 (+) True G159731
TU216500 lncRNA downstream 78573 20752800 ~ 20753254 (+) True G159734
TU216505 lncRNA downstream 176127 20850354 ~ 20850931 (+) True G159739
TU216510 lncRNA downstream 222924 20897151 ~ 20897538 (+) True G159744
TU216542 lncRNA downstream 386429 21060656 ~ 21074573 (+) False fam174b
XM_022679733.1 mRNA upstream 818686 19775339 ~ 19847558 (+) True LOC103025942
XM_022679729.1 mRNA upstream 894117 19666624 ~ 19772127 (+) False mef2a
XM_015607162.2 mRNA downstream 71341 20745568 ~ 20751796 (+) True lysmd4
XM_007254471.3 mRNA downstream 312397 20986624 ~ 21007290 (+) True rgma
XM_007254472.3 mRNA downstream 391842 21066069 ~ 21074573 (+) True fam174b
XM_015607163.2 mRNA downstream 577477 21251704 ~ 21255960 (+) True LOC103034607
XM_007254474.3 mRNA downstream 577477 21251704 ~ 21255960 (+) False LOC103034607
TU216418 other upstream 479325 20185516 ~ 20186919 (+) True G159666
TU215929 other upstream 2089807 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 2089807 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 2089807 18526386 ~ 18576437 (+) False necab2
XR_002651251.1 other upstream 3476993 17177675 ~ 17189251 (+) True zwilch
TU216494 other downstream 62371 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 335075 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 1473617 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 1948612 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 2179185 22853412 ~ 22854081 (+) True G160134

Expression Profile