RNA id: XM_015607163.2


Basic Information

Item Value
RNA id XM_015607163.2
length 2300
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC103034607
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 21251704 ~ 21255960 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTCATGCTGCGTTGCCTGGTTACGGGCGGCGCGTGTAAGGGCGCGCGGGCGCTGCTCTCTCAGCTCGCGCGCTGTGAGTGAGAGTCTGGAGTCACTCAGAGCAGCATGACCGGACTGAACACAGCAAGGATGGAGGCGAATGTAGTGGTGCTAGGAACAGACAGCGTGGGGAAATCAGCTCTCACTGTCCGCTTCCTTACCCGGAGATTTATAGGGGAGTATGGGGATATTGAGTCCATCTTCAGTCACAGCATTACTGTGGACGGTCGAGAGCAAACTCTGAATATATGGGACTCCCCCTTTTCACAGgtCATCACTCATGAAACAGGTTGCTGGCATGTCTCTCAGCAGGATTTGTCTCCAGAGTCTACCACGTATGAAAAAAGGCTGCAGTGGGCCGATGGCTTCGTCCTGGTCTACAGCATCTGTGACCGAGCCAGTTTCAACACCATCGGCAAACTCCTCCAAAGCATAAAGGCTACTAAGGACTACGCAGGCTTACAGAATGTTCCTATAGTTATAGTGGGCAACAAGAGGGACCTGCACCACCGACGCACAGTGCTAAGTGAGGAGGGCCGGCTGCTGGCTCTGTCCGCAGACTGTCAGTTCTACGAAGTCTCGGCCGCAGAGAACTATCACAGCGTCCTCATGGTGTTCCACGGCCTGGTTAACCGCGTCAGGGAGTCCAGGTCGGCGGGCAAAAAGCCGGCAGGCATCAAGGGCATTGTCAAGAGCATGTCTGCCGTGTTTGCCCGGAGGCGTACCGACTCGTTGTGAGTCAGGAGGAATTACGGTGTCACTCCTGATTTTGGTCCGAGGTGACCTACTTTAGATGCCAGAACCGATGCCAGGGTGGGCTGATTCCTCTTTAGCCCCAGTGTTAGGGGTCTGGTGAGGATCTGGAAGCGATGCCCTGTGGATGTTCACTCAAAGCAGCACAACCACTACTTGAGGAAGAGGGCAGAGATGCGTGAGATGGTGGTAGCTGCTGTAAAAATCCATACAATGATGACTGTAACATCATTTTGAGGAATCCATTGAGGTATATGGGGGGCAGCATGAAGGTCTGAGAGAACTAGCATGTGTACAAGCTcatatatgtatttgtatttaaaaaatcatatgtCAGTGAACCTGCAAATATAAGATATGCCACAAAGAGGAAAGATAATTTGCTTATTAACAACAATTATTAAGATCTTGCAAGAAAGCAGGCTGCATTGTTCCATCTAAAATATGCTACTATATGTGGGCCAGAGCAGTGGGACATCCTGAGTGATTTAAACATTCAGAATTGTCTTTATTATCACATGGTCACAAGTACCAGCACAATAACATACAAGGGGGAAACAGGACAGGAAGTCAAGGTGAGCCGCAGCACGTGCAGGCACTGccatcatttattttccatCAGAAGGTATACAAGCTGaaagaaaaggggaaaaaacatACCCCCTGACTGTGTCCTGAAGAGCACAGTGTAGgaacatgcaaaaataaaaggacGGGATATTGGCTGATCACCAAcccaacttatccccaactctccaactcatgcCAAACCATTTTTCCCTGAGAGTTAAGGACACTTCTCGACAATTCAATGCTTAGGGCTATATACTCTTCTAGCCCATGCCTTGCATTGGCCTGCCCCAATAGGCTCAATTTTATCTGCTCCAAATAgtcatattctattggcaacATTTTTCTACAGGGACTGGAGAAGCTGCACATCAATGGGCACAGTTAAAGTAGTTGAATGCATGTATAAGGAGGAATTTCCACAATTATATGGACATAAAGTGTAGCCTATGTAAACCTGTGTTCTCTCTGCAACACAGGGCAGCAGCTTTTCCATTCACTTTACATAACTCTCTTGTGAATGTTAAAGTTGATTATGCAGAGGAAGCAACTGCATATTAGAGTTCTATAATGAAACCATAAAATCTATGAATGCAATTTAATAGACTGCATTGAGATGAATGGTGTGCAGTTTTAATCTGCTCATGTCCTAGAGTCCTAGAGCCTCATGTGTTCAGAAAAGACAAAGATCAGACAGATCACAAATTGTACACATGCAACGATTTTATTGAGAAAGTGTTTTGTTCAAACacagtatacaatataataagcATGCAGTAATATGAGAAAAGCATGTTGTAATATGTAACTCAGCATATGAGAGAGATATGAGAACATTTGTTGGATTTGTTGAACAACTGAGCTTGTTGTTGGTCGATGCCATGTATTGTTCTGTATATATCAAAGTACTGTTTTctacatctgttttttttcatt

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216566 lncRNA upstream 45033 21146273 ~ 21206671 (+) True G159790
TU216554 lncRNA upstream 125608 21089743 ~ 21126096 (+) True G159781
TU216549 lncRNA upstream 170375 21080716 ~ 21081329 (+) True G159778
TU216548 lncRNA upstream 174279 21077219 ~ 21077425 (+) True G159777
TU216542 lncRNA upstream 177131 21060656 ~ 21074573 (+) False fam174b
TU216629 lncRNA downstream 179889 21435849 ~ 21443252 (+) True G159836
TU216630 lncRNA downstream 179889 21435849 ~ 21443252 (+) False G159836
TU216632 lncRNA downstream 179889 21435849 ~ 21443252 (+) False G159836
TU216667 lncRNA downstream 235429 21491389 ~ 21491751 (+) True G159864
TU216671 lncRNA downstream 252635 21508595 ~ 21508833 (+) True G159868
XM_007254472.3 mRNA upstream 177131 21066069 ~ 21074573 (+) True fam174b
XM_007254471.3 mRNA upstream 244414 20986624 ~ 21007290 (+) True rgma
XM_015607162.2 mRNA upstream 499908 20745568 ~ 20751796 (+) True lysmd4
XM_007254464.3 mRNA upstream 577477 20666244 ~ 20674227 (+) True arrdc4
XM_007254465.3 mRNA upstream 577477 20666244 ~ 20674227 (+) False arrdc4
XM_007254475.2 mRNA downstream 99159 21355119 ~ 21371584 (+) True LOC103034933
XM_007254477.3 mRNA downstream 201396 21457356 ~ 21461379 (+) True pex11a
XM_022679979.1 mRNA downstream 375800 21631760 ~ 21699721 (+) True LOC103031832
XM_022679743.1 mRNA downstream 744700 22000660 ~ 22061810 (+) True LOC103025486
XM_007250996.3 mRNA downstream 821518 22077478 ~ 22079758 (+) True LOC103026111
TU216515 other upstream 239910 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 514655 20736598 ~ 20737049 (+) True G159728
TU216418 other upstream 1064785 20185516 ~ 20186919 (+) True G159666
TU215930 other upstream 2675267 18526386 ~ 18576437 (+) False necab2
TU216738 other downstream 891884 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 1366879 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 1597452 22853412 ~ 22854081 (+) True G160134
TU217233 other downstream 2863169 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 5493419 26749379 ~ 26755313 (+) False LOC103021732

Expression Profile