RNA id: XM_015607532.2


Basic Information

Item Value
RNA id XM_015607532.2
length 2143
RNA type mRNA
GC content 0.46
exon number 14
gene id agk
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18004007 ~ 18010554 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGGTGTAACACCAGTGGGTCACGCTGGTAGAGTAATGTCAGGGGCTGAATGAGAGAATCAGGCTCTCAGAGCTCAGGGATCGTACTGTTTGTTCCGCGGGGTTTCACTCTGCTCTGTGCGCTCGGTGTCAGTGTGGTGTAGCCGGTGGTGAGCGCTGGGACCATGGGCCGGGTGGTGAAGGTGTTGAGGACTCTAAGGAATCACTGGAAGAAGTCGAGCTTCGCTGCCTGTGTGCTGTCTTACGGCGGATACTGGATTTATGGGAAGCACTGtgaCAGTGTGCTGCGAAGAGAGGCCTGCCAAGAAGCCAGGGAATTTGGCCGGGCATTAATTGGACCACAGGAGCCTTTAAAGAGAGCAACAGTAATCCTGAATCCTGCAGCAAGCAATGGAAAAGCCAACAGTCTGTTTGAGAAGAATGCAGCCCCCATCTTGCACCTTGCTGGAGTGGAGATCAAAATTGTGAAGgtGGTAACTGGTTTACTACGAAGAAATGATGAGGAAGCGTTTAGTAAAACGCCCATAGGCTTCATTCCTCTGGGCGCTCACAATTCCTTATGCCAAAGTCTACACCTAGCTACTGACAACACAGTCAGGCGCATCACTTCCGCTACGCTGTCCATTCTCAAAGGCGAGACAGTACCGCTGGACATCTTACAGATAAAGAGTGAAAAGGAGCAACCAGTCTTTGCTGTCATGAGTATACGCTGGGGTTCCTTCAGAGATGTTGCAGAATCCATCAGCAAATATTGGTACCTTGGTCCCTTGAAAACAAGAGCAGCGCATTGGTTCAGTACATTAAAGGAATGGCCACAGACTCGCCAAGCTTCGCTATCGTATCTGCCTCCTGTTCCTCGGCCTCCGGAGATGCCCACTGAAAAGCCCCAAAGACCCAACCTGCTACACCGCATCTATATCAGGCTTCAGAATTATTGGAATCCTCCTGTGGAAGAGCCCCCTGTAGAGCCAGAGCCAGAAATTTGGGAGGAGAAGCATCTCTCCACCTTGGAGCTCACAATAAGCACACAGAACAAAAACCCTGTGAAGAACCGTACAGATGATTCTATGGTGCTTTCAGTGGAACCAGACACACTCACAGTTGGACAGTTCATAACTGAAGGTATTAAAAAAGCTGAGAATCCACTGGAGAGCACAGAACACACACTTCAGATAGAGGCCAGTGCATGTCGTGTCAATTTGCCTGAGGAGGGCGCTGGCTTTTATAACATTGACAACGAGGCCTTTGAGGCCATGCCAGTGGAAGTGAGGCTACTGCCGCGGAAACTAAGGTTCTTTTGCAGTGCTGAGCGCAGAGAGGAACTGGCACAAGGGAACTGAAGGTggtctggggaaaaaaaatcatacttgTGGAAGGAATCAGTGGAAATCTGAACTTTGGGTTATCGGACTCCTAACAATGGGCTGTGTACTTTCACTGCAGAGATGATGTTAATCATACAGCATCAGAACAGTATTATAACTCGCATCCATCTTACACTTCATTTAGAATTCTTACAAATACTGGCTctggtctcttttttctctaaaaCAGTGCCACTTAATGGCAAGGATTACACAAGCTACTGAGaacattttgataaaaaaataaaaaatcacccATTCTGCTGTACTGGACGTAGTGCTGGTGACTAGGAAGGCCACATGCTGAACTAACGATTAAAAGATGGGTAAAAGGTGGCCACATGAAGAGAAGAACAAATACTCAAATAGGGTGTAAAATTAAAGTGATGATTAATTAGTAGTCCCCAGCCCAAAGTAAACACTGAGCCCACTGCAgcttcagctttctgttcttgactGACAGAAATTAAAACCTGGTTTGGTCTTCTGCTGTTGTAGCCCATCCATCTCAAGGTTTGAGGTGTTGTACATTGTGACATTCTTTTCTGTTTACTGTAGTTTTTGTTTACTCAAAATGGTTTGAACAGTTTCTGTCGACTTCAATAGTAAATCAATGTACCTTTTTTGGCACAGTTCCCCAAACCACCACTTATAGgagattttctcttttattatactaTTCTGAATTTTATAGGCTGTCCCAGGAGATCACCACTTCAGCATTGCAGAAGAAATACTCAAAGTAGCCCATTTGGAATAAAATCATGCTCTGCTCAAAA

Function

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0016310 phosphorylation biological_process
GO:0046486 glycerolipid metabolic process biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0047620 acylglycerol kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215695 lncRNA upstream 7279 17995698 ~ 17996728 (+) True G159129
TU215692 lncRNA upstream 18143 17983888 ~ 17985864 (+) False rapsn
TU215688 lncRNA upstream 57324 17942316 ~ 17946683 (+) True G159122
TU215684 lncRNA upstream 65919 17931464 ~ 17938088 (+) False G159120
TU215686 lncRNA upstream 72636 17930636 ~ 17931371 (+) False G159120
TU215770 lncRNA downstream 97609 18108163 ~ 18109539 (+) True G159182
TU215773 lncRNA downstream 103451 18114005 ~ 18128429 (+) True G159184
TU215889 lncRNA downstream 400758 18411312 ~ 18411936 (+) True G159272
XR_002651207.1 lncRNA downstream 402807 18413361 ~ 18413950 (+) True LOC111194744
TU215891 lncRNA downstream 417601 18428155 ~ 18428426 (+) True G159274
XM_007256044.3 mRNA upstream 9637 17985993 ~ 17994370 (+) True LOC103029004
XM_007255981.3 mRNA upstream 18103 17971096 ~ 17985904 (+) True rapsn
XM_022679687.1 mRNA upstream 35071 17964383 ~ 17968936 (+) True kbtbd4
XM_007255975.3 mRNA upstream 45573 17949130 ~ 17958434 (+) True ddb2
XM_007255967.3 mRNA downstream 13350 18023904 ~ 18030005 (+) False wee2
XM_022679688.1 mRNA downstream 13677 18024231 ~ 18030005 (+) True wee2
XM_015607513.2 mRNA downstream 19934 18030488 ~ 18035696 (+) True LOC107197792
XM_007255961.3 mRNA downstream 124163 18134717 ~ 18164724 (+) True cftr
XM_022679691.1 mRNA downstream 250611 18261165 ~ 18265803 (+) True LOC103028633
XR_002651250.1 other upstream 814756 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 814756 17177675 ~ 17189251 (+) True zwilch
trnal-cag_11 other upstream 1240399 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 1624184 16379259 ~ 16379823 (+) True G158779
TU214760 other upstream 2867809 15133947 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 515832 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 515832 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 515832 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 2174962 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 2726044 20736598 ~ 20737049 (+) True G159728

Expression Profile