RNA id: XM_007256208.3


Basic Information

Item Value
RNA id XM_007256208.3
length 4266
RNA type mRNA
GC content 0.42
exon number 6
gene id cbfb
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19451775 ~ 19496575 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTACAGTCATAAGTCGGACTCCGAGGAGCCAGGAAGTAACCGTGAGCCATGCAGCGCGAGGGATAAAACAGAAgtgaagcgagagagagagatagagagagagaaagagagagagagagagagaggagtctaGTTCGGGAGTCTAGTCTGAGTGAGGaggaaggaaaagagagaaggagagaaagagagatagacttatacacacactcaaaacacatacacacacgcgcgcacactctctctttctctcttttgtgcCAAAATAAGGCGAATATTACGGCGAGCACGCTGCTCTGCGCGCGCTGCACACACACCGCACGCGAAAGACGGAAGGAAATAAGAgcgggagaaagaaagagagacatacacagagagtaagagagagagagagagttggttGAGGCGACGTTTCTATCGGTAAGACTCGGCGGAACAGACCGACCCGACCGTCCATCGCGCTCAGGATGCCGCGGGTGGTGCCGGACCAGAGGAGCAAGTTTGAGAACGAGGAGTTCTTCAGGAAACTGAGCCGAGAGTGTGAGATTAAATATACCGGTTTCCGAGACCGACCGCATGAAGAGAGGCAAGCCCGGTTTCAGAACGCATGCAGGGATGGACGATCAGAGATAGCTTTTGTGGCGACCGGCACCAATCTCTCGCTGCAGTTCTTCCCCGCCAACCTGCATGGAGAGCAGAGGCAGATGCCCACCCGAGAGTATGTGGACttcgagagagagacaggaaagGTGTACCTGAAGGCTCCAATGATCTtgaatggagtgtgtgtgatctgGAGAGGCTGGATCGACCTGCAGCGCCTGGATGGGATGGGTTGTTTGGAGTATGATGACGAACGAGCACAGCACGAGGATGCTCTGGCTCAGGCAGCTTTTGAAGAGGCTCGCAGGAGGACTCGTGATTTTGAGGACAGGGACCGTTCACATCGTGAGGAACTGGAGccCAGGCGACAGCAGGACCCCAGCCCTGGCTCCAACATGGGCAACACTGACGATCACAAGATGCGCTAGCGGCAATCAACAATCAAGTGGGCAGGGGAAGAATCACACGATCTCCATCACCACAGCAATCTCACAGACCTACAACCCAATCGCTGATCACACCAGAGACCAAAGTCATTCACCACATTTTTAgggatttttttgggggggtggggAGTGGGGGGGTTAAGGTGGGTTGAGAGGGTTTGATGACGGCCCCTCATTAAACATGCAGGTGGGGGCGGGTTGTTTAGGACTGGTATTAATATGGTTGTGGGGGAGAAGTTGTATTTAATGAACCCTCCCTTGTTCCTATTTGGGGGTTTTGCACTATGTGATActttaaaacaaacagacaaaaaaagccCCCACATTGCCTTTCGGTATACAAAGTGTTTCTACCTATGTTTCTTTCATCCCCTATGCAAGctatatcttattattttttggcACTATTGTAATGAAATGgcattcttattattttattcatatttgttTGTGTGAAAGTCAAGATgtttacttttttgtatttttattttctatatatatataaatgtaaacgtGTGTGCTTTCGTAGGAGTTAATGTCGCTAGCAAAATTCATGCTCTTGggtagaaaaaaaggaaagtgaaAAAAGAAGCTGCTGATATTGTTGACGAGGAAGGCTTTTCGTTCTCTCATCATCTCCTGTGCTCTAGAAGTCTTCCATTCTTATCCCATTAGAGTCGTCAAAACACACTTTGAATGCGAACCGAGCTGCAGGAAGCATGTTTTAAGGTCAGCTGTGCTTGTTGTGTCTTCCATGTAAAGCAAAACACAAAgagacttttttgttttctgtattttttcccTTATTTTCATCATGTGAATTTTTGTCAATTTGTTTTGTTCACGTTTGTTCTGATTCAGGGTCTTTTTTCTGTCTTCGCCTCAACAGAAAATGTAGGCCACCTTTTCCACCTTGTGGTGCTGCAACCCCTCAAGTTTATTAAATATGCAGCATTACTCTTCTGTTTGGTTAAATCGTAATACAGCGAGAAAGTAGAATATTGTGCTTCCGGTATCactgttattttctgttttctctcgtATCCTCGTCGTTCTGTCCTCTATGGTGGTTGTTTTTCCCCTCTGCTTTCAGATGCACTAGTGAAGTCAGGCATGTTTGAAAATGTGGGGTACACTTTACTTAAGGAAAGGTGAGGTAGTGTTGGTAGAGTTGGCAATGGATGGattttagaaagtaaaaaagaaaagagacaagTGTGTTGAAAAGTGGGTCAAGTTcaaagtattgtttttttcacacagCCAAAGAAATGGGACTAGCAATGTTCTAAGATTGGAAACAAGCAGTTGTAGTTCACTGTAGCTGTAATCTGCACTTGTTGAGTAATTAGTTGGTAGTGTAAGCAGTGTGACCTTGGAGTTTCCCAAACCCAAGCTCCCAAGCTTTGAAAACACTCTAAATGCACTGacatgcaagaaaaaaaaaaagaactggtaTCATATACCATCACTTCTACCATGTCCCATAGAAGCTGGCCAGACCTGTGAAATGTGTGTAtagtctcctgcattgaatgtggatgttaTTTCTAccagagatgcttgtttgtttgcatggacaaaaCCCACTGCACTATCCACTGTAGGTGGTAATACCTTCTATtatgtattcccagtacacttatgacactgtggatcaagaaaTGCTAAATGCACATACAACTTCAAAAATTAAATGTCCAATCTATTTGGCATCCAATATTAGGCTTTCAATATTATCCCACAACATATACAGAAACAGTTTATAATCAATGTATGTTCTGCTGTCCCATaaatttggcatgtcagtgtagaattctcagtcaaaagtttgcagTGAGTGGTATCTTAAAGATACAGGATAGAGTGATCCATACTGACTAAAAGGATGCAGGTTTAGCTTGCTCCTCTTGCTAGAAAGTTACGTCTCTTGAACAAAATGTGCTTACAGTAACCCATTCATTTCTGTTTCTACTACCACTCAACACAGCCAGCCATGCTGCTAGCAGTGGGAATTACTAGTAAACCATTAGAATGATCTTTGTATGTTTTGTTCAATCTCTTTCCAATTCCAATTTCCAACTTCCATTGCAGTGCTTTTAGTGACAAAAAGCCTTAATGGTTTGGAGGGCAAGTGAAAGAAGATGTGCAAGTGATAGAAGTTGGTTGAGAAGCAGTTGAGAAGGAGCAGTGCAGGATCAGAGATGGGATATATACTATTACAGTAGAAAAGGTAAAGAAGAATGTGATTTGATTCCGCTACttccatatatatttatatgtattatagaCCAGGATCTCAATTACAAAAACCTGCTGTCTCAGCTTCCTTAGAAGGTTTTCAGCTACTTCAGCCATAAATACTTAATATAAGCCACACTGCATTACCTCATTAAATGCACATGGACAGTAGCTCATACCATGTTGAAAATAATGTAGTACCCAGCTTTTGTCTTAAATTGGTCTGAGATGTAgcctattatttaaatatagacTACCTCTAGCTACAACCAAAAAGTAGTTTTGTAGCAGATCTATGTTTGCGAAGACAGAAGAATAATGTATTAAGTCAGAAATGTCTCTACATTACAAATGCTGCTGTTGAGAAGAATGTGCTGTGTAAGGTATTTATTCCTAAGGTGACATTTTTACCACCAAATGATCAGAGACAAGGAGCAAGAGGTCGCTTTGGAGGCCCAATATTTTGTAATACTATTCAAAGATGGAAATCAGTGGCCTAACTAGAGTTAATGTTGCAGTTATGCTATGATTTGTCATTTTATTATGCGGCAGAAAATAGGAAACCCTCTCGCAGACCCCTCTTCCCCCTTCCAGGTGTGTCTTGTGCTGTGTGTCAAAAATACCGTTGCTGGTCCTGTAAGATTCTGCATCATCCTTTTACTTAATGCTGGCATTAAGGCAAGATACACACCAGGGAATGGATTTTctcacatttcatttttttaataaatggtttattttcttaattatctTTAAGTTATTGATGCAGGATTGCCTTTTCATTTTCAGGTCATGCTATGaagaaatgtgtatttttgtgtttttattgctaCCTTTTCCCAAAATTCCCTCAGGAATTAGGGATGCTTTTTCTATGTTTTAtggttttagcttttttttttttgcattttaagtgGGGAGGACTGTTTATTGAAGTGTTATGTTTGACTTGTTTCTAAATAAACTTTCAACAAACCTC

Function

GO:

id name namespace
GO:0048769 sarcomerogenesis biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045214 sarcomere organization biological_process
GO:0060047 heart contraction biological_process
GO:0016513 core-binding factor complex cellular_component
GO:0030018 Z disc cellular_component
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216181 lncRNA upstream 189449 19259296 ~ 19262326 (+) True G159480
TU216064 lncRNA upstream 641705 18786541 ~ 18810070 (+) True G159398
TU216054 lncRNA upstream 699621 18738284 ~ 18752154 (+) True G159389
TU216052 lncRNA upstream 715102 18736402 ~ 18736673 (+) True G159388
TU216026 lncRNA upstream 716961 18732483 ~ 18734814 (+) True G159365
TU216298 lncRNA downstream 67174 19563749 ~ 19563966 (+) True G159579
TU216302 lncRNA downstream 88833 19585408 ~ 19585837 (+) True G159583
TU216304 lncRNA downstream 89873 19586448 ~ 19586972 (+) True G159585
XR_002651254.1 lncRNA downstream 110841 19607416 ~ 19665139 (+) True LOC103038177
TU216325 lncRNA downstream 131271 19627846 ~ 19630672 (+) True G159588
XM_022679724.1 mRNA upstream 18650 19317378 ~ 19433125 (+) True gnao1
XM_022679722.1 mRNA upstream 18650 19317382 ~ 19433125 (+) False gnao1
XM_022679723.1 mRNA upstream 28862 19317373 ~ 19422913 (+) False gnao1
XM_007256213.2 mRNA upstream 193741 19253357 ~ 19258034 (+) True nudt21
XM_022679719.1 mRNA upstream 214916 19122919 ~ 19236859 (+) True bcar1
XM_022679725.1 mRNA downstream 3448 19500023 ~ 19512225 (+) True fan1
XM_022679727.1 mRNA downstream 19032 19515607 ~ 19520553 (+) True LOC111194775
XM_022679732.1 mRNA downstream 170049 19666624 ~ 19772127 (+) True mef2a
XM_022679729.1 mRNA downstream 170049 19666624 ~ 19772127 (+) False mef2a
XM_022679731.1 mRNA downstream 170049 19666624 ~ 19772127 (+) False mef2a
TU215929 other upstream 875338 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 875338 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 875338 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 2262524 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 688941 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1240023 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 1512727 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 2651269 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3126264 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile