Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_015607602.2 |
| length | 1080 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 7 |
| gene id | cbfb |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_035914.1 |
| NCBI id | CM008317.1 |
| chromosome length | 41377133 |
| location | 19451775 ~ 19496575 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0048769 | sarcomerogenesis | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0045214 | sarcomere organization | biological_process |
| GO:0060047 | heart contraction | biological_process |
| GO:0016513 | core-binding factor complex | cellular_component |
| GO:0030018 | Z disc | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003713 | transcription coactivator activity | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| GO:0001076 | obsolete transcription factor activity, RNA polymerase II transcription factor binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU216181 | lncRNA | upstream | 189449 | 19259296 ~ 19262326 (+) | True | G159480 |
| TU216064 | lncRNA | upstream | 641705 | 18786541 ~ 18810070 (+) | True | G159398 |
| TU216054 | lncRNA | upstream | 699621 | 18738284 ~ 18752154 (+) | True | G159389 |
| TU216052 | lncRNA | upstream | 715102 | 18736402 ~ 18736673 (+) | True | G159388 |
| TU216026 | lncRNA | upstream | 716961 | 18732483 ~ 18734814 (+) | True | G159365 |
| TU216298 | lncRNA | downstream | 70403 | 19563749 ~ 19563966 (+) | True | G159579 |
| TU216302 | lncRNA | downstream | 92062 | 19585408 ~ 19585837 (+) | True | G159583 |
| TU216304 | lncRNA | downstream | 93102 | 19586448 ~ 19586972 (+) | True | G159585 |
| XR_002651254.1 | lncRNA | downstream | 114070 | 19607416 ~ 19665139 (+) | True | LOC103038177 |
| TU216325 | lncRNA | downstream | 134500 | 19627846 ~ 19630672 (+) | True | G159588 |
| XM_022679724.1 | mRNA | upstream | 18650 | 19317378 ~ 19433125 (+) | True | gnao1 |
| XM_022679722.1 | mRNA | upstream | 18650 | 19317382 ~ 19433125 (+) | False | gnao1 |
| XM_022679723.1 | mRNA | upstream | 28862 | 19317373 ~ 19422913 (+) | False | gnao1 |
| XM_007256213.2 | mRNA | upstream | 193741 | 19253357 ~ 19258034 (+) | True | nudt21 |
| XM_022679718.1 | mRNA | upstream | 214916 | 19189889 ~ 19236859 (+) | False | bcar1 |
| XM_022679725.1 | mRNA | downstream | 6677 | 19500023 ~ 19512225 (+) | True | fan1 |
| XM_022679727.1 | mRNA | downstream | 22261 | 19515607 ~ 19520553 (+) | True | LOC111194775 |
| XM_022679732.1 | mRNA | downstream | 173278 | 19666624 ~ 19772127 (+) | True | mef2a |
| XM_022679729.1 | mRNA | downstream | 173278 | 19666624 ~ 19772127 (+) | False | mef2a |
| XM_022679731.1 | mRNA | downstream | 173278 | 19666624 ~ 19772127 (+) | False | mef2a |
| TU215929 | other | upstream | 875338 | 18526386 ~ 18576437 (+) | True | necab2 |
| TU215930 | other | upstream | 875338 | 18526386 ~ 18576437 (+) | False | necab2 |
| TU215931 | other | upstream | 875338 | 18526386 ~ 18576437 (+) | False | necab2 |
| XR_002651250.1 | other | upstream | 2262524 | 17177675 ~ 17189251 (+) | False | zwilch |
| TU216418 | other | downstream | 692170 | 20185516 ~ 20186919 (+) | True | G159666 |
| TU216494 | other | downstream | 1243252 | 20736598 ~ 20737049 (+) | True | G159728 |
| TU216515 | other | downstream | 1515956 | 21009302 ~ 21011794 (+) | True | G159748 |
| TU216738 | other | downstream | 2654498 | 22147844 ~ 22152785 (+) | True | G159926 |
| XR_002651264.1 | other | downstream | 3129493 | 22622839 ~ 22623307 (+) | True | LOC111194779 |
