Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007256213.2 |
| length | 1203 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 7 |
| gene id | nudt21 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035914.1 |
| NCBI id | CM008317.1 |
| chromosome length | 41377133 |
| location | 19253357 ~ 19258034 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0006378 | mRNA polyadenylation | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0042382 | paraspeckles | cellular_component |
| GO:0005849 | mRNA cleavage factor complex | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0017091 | AU-rich element binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| id | description |
|---|---|
| K14397 | NUDT21, CPSF5, CFIM25; cleavage and polyadenylation specificity factor subunit 5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU216064 | lncRNA | upstream | 443287 | 18786541 ~ 18810070 (+) | True | G159398 |
| TU216054 | lncRNA | upstream | 501203 | 18738284 ~ 18752154 (+) | True | G159389 |
| TU216052 | lncRNA | upstream | 516684 | 18736402 ~ 18736673 (+) | True | G159388 |
| TU216026 | lncRNA | upstream | 518543 | 18732483 ~ 18734814 (+) | True | G159365 |
| TU216023 | lncRNA | upstream | 525320 | 18727015 ~ 18728037 (+) | True | G159363 |
| TU216181 | lncRNA | downstream | 1262 | 19259296 ~ 19262326 (+) | True | G159480 |
| TU216298 | lncRNA | downstream | 305715 | 19563749 ~ 19563966 (+) | True | G159579 |
| TU216302 | lncRNA | downstream | 327374 | 19585408 ~ 19585837 (+) | True | G159583 |
| TU216304 | lncRNA | downstream | 328414 | 19586448 ~ 19586972 (+) | True | G159585 |
| XR_002651254.1 | lncRNA | downstream | 349382 | 19607416 ~ 19665139 (+) | True | LOC103038177 |
| XM_022679719.1 | mRNA | upstream | 16498 | 19122919 ~ 19236859 (+) | True | bcar1 |
| XM_022679718.1 | mRNA | upstream | 16498 | 19189889 ~ 19236859 (+) | False | bcar1 |
| XM_007256215.3 | mRNA | upstream | 141680 | 19076082 ~ 19111677 (+) | True | cfdp1 |
| XM_022679717.1 | mRNA | upstream | 188201 | 18997053 ~ 19065156 (+) | True | carmil2 |
| XM_022679715.1 | mRNA | upstream | 261646 | 18983602 ~ 18991711 (+) | False | ctcf |
| XM_022679723.1 | mRNA | downstream | 59339 | 19317373 ~ 19422913 (+) | False | gnao1 |
| XM_022679724.1 | mRNA | downstream | 59344 | 19317378 ~ 19433125 (+) | True | gnao1 |
| XM_022679722.1 | mRNA | downstream | 59348 | 19317382 ~ 19433125 (+) | False | gnao1 |
| XM_007256208.3 | mRNA | downstream | 193741 | 19451775 ~ 19496575 (+) | True | cbfb |
| XM_007256209.3 | mRNA | downstream | 193741 | 19451775 ~ 19493357 (+) | False | cbfb |
| TU215929 | other | upstream | 676920 | 18526386 ~ 18576437 (+) | True | necab2 |
| TU215930 | other | upstream | 676920 | 18526386 ~ 18576437 (+) | False | necab2 |
| TU215931 | other | upstream | 676920 | 18526386 ~ 18576437 (+) | False | necab2 |
| XR_002651250.1 | other | upstream | 2064106 | 17177675 ~ 17189251 (+) | False | zwilch |
| TU216418 | other | downstream | 927482 | 20185516 ~ 20186919 (+) | True | G159666 |
| TU216494 | other | downstream | 1478564 | 20736598 ~ 20737049 (+) | True | G159728 |
| TU216515 | other | downstream | 1751268 | 21009302 ~ 21011794 (+) | True | G159748 |
| TU216738 | other | downstream | 2889810 | 22147844 ~ 22152785 (+) | True | G159926 |
| XR_002651264.1 | other | downstream | 3364805 | 22622839 ~ 22623307 (+) | True | LOC111194779 |
