RNA id: XM_022679714.1


Basic Information

Item Value
RNA id XM_022679714.1
length 4388
RNA type mRNA
GC content 0.47
exon number 13
gene id ctcf
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18983602 ~ 18991711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGTGCGGAGCCTCTACTCTGCAAAAGCGGGAGAGGGATTAAAACCGCCGGAGGAGAAGGACGCAGTTTTAGAGCTTCGCCTCGCGCCAGAGGAACAACCGACCTCCGGGGTTTGCGTCGAAACCGACGAGAGAACAAACGAGGAACAGCAGcAGTAAGAGAGGAAAGGCAGACAGGCGGATTACTCATTCATCAAAGGCAGGGAGttggagagtgagagaaaggggtAGAAAGATGCAGTTTTTACGTTTGTTGCAGGTGTTATCCATGGAGGGGGGACCGACTGAAGCTGTAGTGGATGAGGCAGGGGATGCTTTCAAAGCCAAGGAGTGCAAGACCTACCAGCGACGGCGAGAGGATGAAGAAGTGGGAGCAGAGCTGCTGCAGACTGCTGGTCTAGAAGTCGTGGGGCAGGCACATGTTGTTGAGGGAGAGACAACAACTGTAGTGGCTGATGCCCAGCAGCAGTTGGTGGAGGGGGTTGTTAGTGTCAACAGCAGTGTTGAGATGATGGTGATGGAGACTCTGGACCCAGCCCTGCTTCAGATGAAGACTGAGGTCTTGGAGGCTGGAGTGGGAACTCCTGTGGGAGTTAGTGTAGCTGGAGCAGCCCATGAGGCTACAGTCACCACTGTAGATGAcacccagatcatcacactacaGGTGGTAAACATGGAAGAGCAGCAGCTGGGCTTGGGTGAGTTGCAGCTTGTGCAGGTGCCTGTCTCTGCTGTGCCGGTCACTGCTGCCACTGTGGAAGAATTGCAGGGCACCCTGGTTGATGCGACCGCCATGCCCAAAGATGGAGAGCCTGTCATCTGCCACACGCTGCCACTACCTGAAGGCTTCCAGGTGGTGAAAGTGGGTGCTAATGGAGAAGTAGAGACTGTGGAACAAGATGAGCTTCAGGCCCATGAGGAACAGCCTCTGcagcaggaggaagaggagatgCCTGAGCCCCAGAATGACGATCCAACCTGGGCTAAGGATCCTGACTACACACCCCCTGTTAAGAAACccaagaaaacaaagaaaagcaaGCTGCGCTACAACACAGAGGGCGAGAAAGACATGGATGTCTCTGTTTACGACTTTGAAGAGGAGCAGCAGGAGGGCCTGCTCTCTGAGGTCAATGCTGAGAAGGTGGTGGGCAACATGAAGCCcccaaaaccaaccaaaatCAAGAAGAAAGGTGTGAAGAAGACATTCCAGTGTGAGCTGTGTAGCTACACCTGCCCACGGCGCTCCAATCTTGATCGCCACATGAAGAGCCACACAGACGAGAGACCCCACAAATGCCATTTGTGTGGGCGTGCCTTCAGGACAGTCACACTGCTGAGAAATCACCTGAACACCCACACAGGAACCAGACCACACAAGTGTACTGATTGTGACATGGCCTTTGTGACCAGCGGTGAGCTGGTGCGGCACCGTCGCTACAAGCATACTCACGAAAAGCCCTTCAAATGCTCCATGTGTGACTATGCTAGTGTAGAGGTCAGCAAACTGAAGAGGCATATTCGCTCTCACACTGGAGAGCGGCCTTTCCAGTGCAGCCTTTGCAGCTATGCCAGCAGAGACACCTACAAGCTGAAGAGGCACATGAGAACCCACTCAGGGGAGAAGCCGTATGAATGCTATATCTGTCATGCTCGGTTTACCCAGAGTGGAACCATGAAGATGCATATTCTGCAGAAGCACACAGAGAATGTGGCCAAGTTCCACTGTCCCCACTGCGACACAGTCATTGCCCGCAAGAGTGACCTGGGTGTACATCTGCGCAAGCAGCATTCCTACATTGAGCAGGGCAGGAAGTGCCGTTACTGTGAGGCTGTATTCCATGAGCGCTATGCTCTTATCCAGCACCAGAAGTCCCACAAAAATGAGAAGCGCTTCAAGTGTGACCAGTGTGACTATGCCTGCCGACAGGAGCGACACATGGTGATGCATAAACGcactcacactggagagaagccATATGCCTGCAGCCACTGTGAAAAGACATTCAGGCAGAAGCAGCTCCTGGACATGCACTTCCGTCGCTACCATGACCCCAACTTTGTGCCCACCTCCTTTGTGTGTACCAAATGTGGCAAAACCTTCACTCGGAGGAATACCATGGCCAGGCATGCTGAGAACTGCAATGGAATTGATTCTGGGGAAGGAGAAAATGGAACACCAACCAAGAGGGGCCGGGGTGGTCGGAAGAGAAAGATGCGTTCCAGGAAGGATGACGACGATGACAGTGATGAGCATGGAGAGCCTGACCTGGATGACATTGAtgaggaagatgaggaggatgaGGCGCTTGAGGATGTGCACATGGAGGTAGAGCAGGCACCACCCAGCATCCCTATCCCTGCCCCGGCTGAGCCTCCAGTTAAGAGGAAACGTGGTAGACCCCCAAAGAACCCTCCTAAGACTCCCCCAGGCAAACCTACTACCATAGCACCTGCTGCAACTGCCATTATCCAGGTGGAGGATGAGGGCACAGGGGCCATTGAGAACATCATAGTGAAAAAGGAGCAGGATGGTGTGGACTCTTCAGTGGTTGGTGCAGCATCAGCAGAGCCTGTGGTGGAAGAGGTAGAAGCTGTGGAGGCTGGTGTGGAGACGGTTCAGCTAACTGTCTCTGAGGCTGCGCCCAATGGAGACCTTACCCCAGAAATGATCCTTAGCATGATGGACCGGTGATGTGGACACAGAAAAAAGCATGCTCACAGGCTTAGAACACATACACGCAAACATACACTCAAGTCCCTATCATGTCGTCACCTCCCCGCCTCACAGAAGACCTCTCTGTTCATGGCGTCCTTGTTCAGTTTCAGAATGAAATTTTCAATTTCTTTTCTCATTGTTAAACTTGAGCTtaatttgtggaaaaaaaatgcttccCACTTTCCTGAACTCTGCTCCTTATATTTTAAGTTAGATAGTCTGATTATCCCGTGTATATCTTGTGGCGGGGGTCTCTGAGATGAGAGGACTGAGCAGTTGGAATTACTGTAGTGAACTAAATGCATttatggttttgttttttttttttttttttttttttttccttttttttctaaccAGTATGCGACTATTTCTTCAACCTTTCAGTCTGACATTACCATGGCAATATTCTAAAGGAAAACATTCTGTGCCTGGTCAAGCCTTGATATTTAGAATTGCTATCACTGCTGTAGAAATGGGCATTTAACCCCATCTGTTCCACAAAGATCCTTTTTAAAGTCATATATGACAACTTTTATCgctgttgattttgtttttttcttttgctttcatTGGTCATAATTAACAATGGTAGAGAGAAGATTAGAAATGTAGCTATATGATGATCTGGCCAGGGACGATGATCTTCATCCatcaactatatatatttaaaaaaaacaaacaaaagtaaaaaaaaaaaaagaaaactgcagTTGATAACATTGTACAAAACAAAGGTAATCTTGGCTGGTCTTGCTTGtaaataaatttttattttctgttttattatgaGCGTTTTAATCCTTTTCTAGTGAAATGATGACCTTGATTGCTGGGGCAATGACATTTTAAATGGTAGTCATTTAAGAAAACGTCACAGATGGCTTTTAAATCTCCAGGGGGGGGTggaaacacctaaaaaaaaaaaagattatgttTGCAACAAAAATCACCCATCCCCAACACCACTATGCTCCTTtccctacatttttttttgtccagccACGGCTTGAAATGTcgcctgttttttaaatgttctcaaCCTGCTTTTCATAGAATGGAACAAGAGCTTCTCCTGCATTTAATCACTTGCGGATATGAGAGGGCAAGTTTATAGATTGTCTCGAGAATGCGCTCCTGTGTTGGGTTTGTGGCTGtgtaaaaatgtggaaaagggACAGAAAGGGGTTGGAAAAGCTTCAGGCTTGTTTAGCTGTGCTCAAGCTAATCACTGCTACTGACCGAAAGCAATCACAATATTGTACGCTGTCCACGTTTAGTTTTCTTACACGGTTTGTACGGGCCACACATTTTATGATTTAAAACCGTGGTCTGATGAAGCCATTTTGATGTGTTCTATTCTGGAAGGACGTTTTGGGGGACAGAATAATTGTTTAAAGAAAGGATGTTTGTCTGAGAACAGTGTCTTTtgctgaggtttttttttccctcccccAAAATGAAGTTTttctatttgtaatttttttttaagctcttaatttagttttttgttttgttaaaccTGGCTACAACTGTGTGAATTTTACAATGGTCAGAAAACCAACATTATAAAGACATTTATTATGGCTGGGTGGGGCATTGAGGGCATATGAAAAGGTGGTGTGGAGAATGTATTGCTgtacagctaataaaaaaaaatattgtccta

Function

GO: NA

KEGG:

id description
K23195 CTCF, CTCFL; transcriptional repressor CTCF

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216064 lncRNA upstream 173532 18786541 ~ 18810070 (+) True G159398
TU216054 lncRNA upstream 231448 18738284 ~ 18752154 (+) True G159389
TU216052 lncRNA upstream 246929 18736402 ~ 18736673 (+) True G159388
TU216026 lncRNA upstream 248788 18732483 ~ 18734814 (+) True G159365
TU216023 lncRNA upstream 255565 18727015 ~ 18728037 (+) True G159363
TU216181 lncRNA downstream 267585 19259296 ~ 19262326 (+) True G159480
TU216298 lncRNA downstream 572038 19563749 ~ 19563966 (+) True G159579
TU216302 lncRNA downstream 593697 19585408 ~ 19585837 (+) True G159583
TU216304 lncRNA downstream 594737 19586448 ~ 19586972 (+) True G159585
XR_002651254.1 lncRNA downstream 615705 19607416 ~ 19665139 (+) True LOC103038177
XM_015607589.2 mRNA upstream 2610 18878135 ~ 18980992 (+) False ripor1
XM_022679713.1 mRNA upstream 2610 18904762 ~ 18980992 (+) True ripor1
XM_015607588.2 mRNA upstream 2610 18931827 ~ 18980992 (+) False ripor1
XM_007256217.3 mRNA upstream 2610 18931828 ~ 18980992 (+) False ripor1
XM_007256219.3 mRNA upstream 170274 18762685 ~ 18813328 (+) True ranbp10
XM_022679717.1 mRNA downstream 5342 18997053 ~ 19065156 (+) True carmil2
XM_007256215.3 mRNA downstream 84371 19076082 ~ 19111677 (+) True cfdp1
XM_022679719.1 mRNA downstream 131208 19122919 ~ 19236859 (+) True bcar1
XM_022679718.1 mRNA downstream 198178 19189889 ~ 19236859 (+) False bcar1
XM_007256213.2 mRNA downstream 261646 19253357 ~ 19258034 (+) True nudt21
TU215929 other upstream 407165 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 407165 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 407165 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 1794351 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 1193805 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1744887 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 2017591 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 3156133 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3631128 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile