RNA id: XM_015607588.2


Basic Information

Item Value
RNA id XM_015607588.2
length 4452
RNA type mRNA
GC content 0.52
exon number 23
gene id ripor1
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18878135 ~ 18980992 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCTGTTTCACAGGCTTTCAGTATTAGGGGAGGATGAAAAAGTGTAGAAGGACATCAGGGGTAGAACTGTGATTATTCTGTACAGAAATAAGGGAACTCTGGAACATCTTGAAGAATCTGGCTTCTTTATTGTGAACTATCCAGAGGAAGCAGCTGGCAAACATGTACAGTGGATATGGAGGGAGTCCCTCCAGATCAGCGTCCACCATGTCCCTGTCCGTCCGGCCGACGCGCCGAGTCCTCTCCAGGCCAATCACTAGGAGTCAGTCATTTGCTGGAGTCAACTCCTACGATAAACACTACAGGAGCCTCTCTGTGTTCAGAACTCCAGCGGCTACAAGAAAGGCTCCCTCCAGAGGAAGCAGGATGTTCACACTCTCCACCAAATCTCCACCTCCAAAGGTGCCCCAGCCTGAGAGGCTGGATGAAGTCTACGAGGCCCTAAAGAGAGGACTCCAATCTTACCTGCAGGTCCATCAGATGGAGCTGGACAGCCTGAATCGCCAAATGAAAGAATCCAAGAGGAACTCTCGCCTGGGTTTCCTTTATGAACTAGACAAGCAAGTAAAGGTGATTGAGAGATTCATGAGACGGCTGGAGTTCCACCTCAGTAAGATTGATGAACTATATGAAGCATATTGCATGCAGCGAAGACTGCGGGACGGGGCCAATAAGATGGTAAAAGCTTACACAGCATCTCCAGGCAGCCGAGAGGCTCGGGAGAGTCTGTCCGAGGCCAACAAAGGGTTTAAAGAGTACACTGAgAACATGTGCATGTTGGAGAGTGAGCTGGAAAACCAGCTGGGGGAGTTCCATGTGAAAATGAAAGGTCTGGCTGGATTTGCTCGTCTGTGTGCTGGAGACCAGTATGAGATCTTTATGAAATATGGCCGACAGCGCTGGAAACTGCGAGGTCGGATAGAGATCAATGGCAAGCAGGTGTGGGACAGTGAGGAGATGGTGTTTCTGCCCCTCATCACAGAGTTTCTCTCTATAAAGGTGACTGAGCTGAAGAGCCTGGCCAATCACGTGGTGGTGGGGAATGTGTCATGTGAGACCAAAGACCTGTTCGCCGCCCTGCCACAGACTGTGGCCGTGGACATCAACGACCTGGGCACCATCAAACTCAGTCTGGAGGTCACATGGAATCCATTTGACAAAGATGACCAAGCCTCCACAGCGAGCACAGTGAACAAAGCTCCTACAGTGAACAAACGTTTCTCCACCTACAACCAGAGTCCTCCAGACACGCCCTCTCTGCGCGAACAAGCCTTCTACTCAACCCCTCGGAGTTTGCCACCCAAGCAGCGCTGGTCTCTCCTGGACGTGTTCCGGGATACACTGGCCGAGAAGCTGTCTCAAAGCTGCAGCTGTGGGGATGTCTCCTCTGCCAGCATTGGCTCCTCTCAGTCCCACAGTAATAACATGCTGAGGCGGCAGGATGAGATGGAGAACGGGACCGCCTGGTCAAACTCCTCAGAATCCTCTGACGACTCGTCCAGCCCCCAGCTTTCCCTAGGTCTGCGCCACGCCCACAAGAACCTGGTCCAGCCTGAGGTTCAGGCTGCCGCCCCCTCCATCGAGATCTCCTTTACTCCACGTGAATCGGCCACCTCCACGCCCACTCGCCTGGCCAATCAGAAGGAGGAAGACGAGGAGGAACCGGAGAAATCCCAGGTGACCACCATCACGGTTACTGCAGATGCTGCTGGGAAACCGGAAATGCCAAATGGCCACGCCCGCTTCTCTCGGTCCCTGAGCCACATCAGCGAGAGCAGCGTGGATGCAGCCCTGATGGAAAGACCAGTAAGTGAATGCTTCGAGCCTACCGAGGTGCCCTCAGCATCGGCAACGGACATGGTGATGGACATGCCTGTCCGGGCTGAGCTGTGCATGGTTATTCCTGAACCTCAAGATTCCAGATCATCAATCTGCTCTGTAAGTAGCTCTGAAATTGCACCACATTCTACAGAGGAGACCTGTGTCTCTGCTACAGAATCTGAGGAGCCTACAGCCCCTTCCAGAGCTAGCTCTGCCTCCTGCACCCGCAGCGAGGAGGATTCAGTTTGTATATCTCCTAAATCGGAGGCTAATTCCCAGCAGAACGATGCTGGGCCTTCAAGGACTGAGGATTTGATACAGGCCCAGGACTCAAAACCACTTACCCAGACCCACATAGACTCCACACAGGTCGAGAAGCCAGAGAATAAGGCAGCGGCACAAGAAATGGTCAGTGGTCTGGAGGAGGCCTTAAGTGCTGTGGTCTCCTCTCTCGATGACTACAGGGGCCAGTTTCCTGAGCTGCAGGTTCTTGAGCAGGAGCTCAAGCTGCTGGAGGAAGCTCTAACTgGTCGAAGTCGAAGTCGCTCATCCAGTGTGAGTTTGACAGTGGAGACGGCTCTTGGAAGCTTTGATTTCCTCAACACATCAGATCTAGAGGATGacgaggaagaagaggaggatgggGAGAAGCGCAGTGTGACAGACAGtggcaCAGGAGCGGTGGAGGAGTGTGTGGCTGATGATGAGGGTTGCCAGGACCGTTGCTGGGACACTCCCTCAGGACCACTCAGCACAGGCTGCCAGGCTCTAGATCGCACCCTGCTGGTCCATCTGCACAACTGCAGCTCTCAACTGTTGAGGTTGGGGACATTTGGGCCACTTCGCTGCGGGGAGATGTACGCTCTGGACCGGCTGCTCCGAGAGGCTCGCGTACTTGAACTCATTCGACGGGTTGCCAAGGACACTGCGGGCACCGCTGGCCAGCCAGATGAAGTTATTCCACAGTTAGAGCAGTGCCAGGGGGCTGTGTTGCTATGGAGGCAGTGTACAGATGGCTGCAGTGTGTTCAGCACCTCCACAGAGACTTTCCTGCAGACACTCAACAACACTTACGCCAGCAGACTACCGGAGAGAGGATCCGGCTACACAGACacagTGTTTTTGAGGTTAGTGGAGAGGATTCTGGAGAAGAGGCTGCCGAGGCGAGGCGGAGGTGCAGCTAAAGAAAGTCTCACAATTTTCCAGTTCTGGAGCTACTTGGAGGCAGAGGGTGTGAGTGAACTGGACACACACATTACTGAGCTGGCTGAAGAAGTGTGGTTGGTGCAGTCTCTGCAGTCTGGTGAGCAAGATGTGTTGCTGAAGGCCCTAAAGAGACCCCCAGAGTGCAGTTTGAAGCGTGAAGGCCTGCGGGCCGTCAGCCTGCTGTTAAGGGACCCCCGGGGGAAAGTGTGCAGCAGCGCCAGCTCACTGCTGCGCAGCCTGGCAGAGCAGCCACGACACAGAGAAAGGgCGTTGGTGAGctgtctggagctgctggaggacGAGAGTGTTGAGACCCGAGTCTGTGGATGCAAGGCACTCGCACTTCTAAAGGCCAAAGAGAGCATTGAGCAGCTGGTGTATCTGTGTCGCACAGACAAGGAGGACGTGAGAGACGCAGCCAAACAAGCTCTTCTGGTGCTGGGTGAAGAGGGGAAGATGGCACATCGACATGTGGAATCGGCTCAGGATGGAGTCCCCCGCCTTTTCGCACCTGGCAGCATGGCCAGCACTGCTTTCTAAATGCCATCGTACCAGAGATACCCACAGAAACTATATGCCCATTGCTCCTGTCTACTCATACTTATATTCATGCCTACAGAAAACTCATGATCGAACATGCTCCATACACTGTTGCTGAAGAGCAGATACAGACCGACACCATCGCTGTGATAACATACAGAGCTGGTGTCACATATTTGATGCAATCGAAGGACACGAGGACACGGACATGATTTTGTATGTAGATACGATATAATAGAAAGAGAATGAGTGGGGTGGGCTGGGGTGCACTGGGCTGGGCTTACCATGAGTGTTTTGCTGCCTTATGACCTGATGGTGTTGCCTTCACAAATCAAGAAACTGGGCTTGTACCAGTGCTTCAGATGCGGAGTGGATGGACAGGCGTTGCTGCACTTTTGTGCCCTGTGGCACTAGCAGTGGAATGAAGTGTTATTTTCACACGATTTACAGGGGGATGCACTTTTCAATCTGCAGAGTATGTGATTAAGCTTGTCCTCTTTGTAAAGAGTTCTTATGTTTGTTTTGCAAACGTAAGTTGGTAGTGGGAATGGGCTCAGGAGTGACATTGCTCCTCAGGGCGATGGGGAGacagagtgtatgtgtgtgtgtatgtgtgtgcgtgtgttttaaAGGGTGAGTCTGTATTAGCGTAACAGTGCCATCATTCCATACTGTCATTATGTATGCTTTACTGACACAGTATGTATAATCCAATGGAcgtgtacatgttttttttattgtgttgtaatttagtttaaaacaaatgttaatACACAAACCTAAAGGTTTGAGTGCTAACAACTTATAAAACTTCACCACACACTACCTGAGATTTGAGCCAACGGCGATGTATCTGAAAAGATATCTGCTGTAAAAGTGGTGaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216064 lncRNA upstream 121757 18786541 ~ 18810070 (+) True G159398
TU216054 lncRNA upstream 179673 18738284 ~ 18752154 (+) True G159389
TU216052 lncRNA upstream 195154 18736402 ~ 18736673 (+) True G159388
TU216026 lncRNA upstream 197013 18732483 ~ 18734814 (+) True G159365
TU216023 lncRNA upstream 203790 18727015 ~ 18728037 (+) True G159363
TU216181 lncRNA downstream 278304 19259296 ~ 19262326 (+) True G159480
TU216298 lncRNA downstream 582757 19563749 ~ 19563966 (+) True G159579
TU216302 lncRNA downstream 604416 19585408 ~ 19585837 (+) True G159583
TU216304 lncRNA downstream 605456 19586448 ~ 19586972 (+) True G159585
XR_002651254.1 lncRNA downstream 626424 19607416 ~ 19665139 (+) True LOC103038177
XM_007256219.3 mRNA upstream 118499 18762685 ~ 18813328 (+) True ranbp10
XM_022679978.1 mRNA upstream 355407 18525528 ~ 18576420 (+) False necab2
XM_022679698.1 mRNA upstream 431008 18496094 ~ 18500819 (+) True LOC111194773
XM_007256233.3 mRNA upstream 440301 18472936 ~ 18491526 (+) True chka
XM_022679714.1 mRNA downstream 2610 18983602 ~ 18991711 (+) True ctcf
XM_022679715.1 mRNA downstream 2610 18983602 ~ 18991711 (+) False ctcf
XM_007256216.3 mRNA downstream 2610 18983602 ~ 18991711 (+) False ctcf
XM_015607591.2 mRNA downstream 4496 18985488 ~ 18991711 (+) False ctcf
XM_022679717.1 mRNA downstream 16061 18997053 ~ 19065156 (+) True carmil2
TU215929 other upstream 355390 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 355390 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 355390 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 1742576 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 1204524 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1755606 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 2028310 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 3166852 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3641847 22622839 ~ 22623307 (+) True LOC111194779