RNA id: XM_007256233.3


Basic Information

Item Value
RNA id XM_007256233.3
length 3211
RNA type mRNA
GC content 0.43
exon number 12
gene id chka
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18472936 ~ 18491526 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGTAGCCAATCGCGCGGGACAACAAACGCCATACACGGTGTATCCATCCGCACGCAGGCAGGGCGAGCAGCGAGGCGCACTAGTTCATTGTAGCTAACGGTACTGCGTACGCGCGTCTGTCCTCCCCGCTCCCCACAATCAGAGCCGCTCCTGcagcacacacaacacagtCACCTGAGTTCCTCAGTAAAGGCAGACATGAAGACCAAATTCATCAATGGGGTCTCCTCGTCCCCCTCCATGTCTCTGGGTTTACTAGTGACAGAAAACGCGCTCCAGGTGCAGCCGGACACGGAGCCCGACTGTAAAGACATACGGCCAGACGAGCCCGACCAGCAGACCAAGCATAAGGCGTTCATGTGGTGCAGAGAGTTCCTCCACGGAGCCTGGAAGACTGTTGAAGAAAATGATTTCCAGATCACAGTCATCAGGGGGGGTCTCAGTAACAAGCTGTTTCTCTGCGCACTCCCAGAAGAGCAGCAGAGTGTTGGGGATGAGCCGAGGAACGTGCTACTGCGCCTTTACGGAGCCATTCTGCAGATGTCCTGTAATAAAGGGGAATCCAGACAGTCAAACAAAGACAATCACTTTCAAGGAGCTGAAGCTATGATCCTGGAGAGTGTGATGTTTGCCATCCTGGCCGAGAGGCAGCTGGGCCCTAAGCTCTATGGCATCTTCCCTCAGGggagactggagcagtttgTGCCAAGCCGGAAGCTTAATACGGATGAGCTGAAAATTCCCAGCATATCTTCTGAGATTGCTGAGAAAATTGCCAAGTTTCACAGGATGAGAATGCCTTTCAACAAAGAGCCCAAATGGCTGTTTGGCACCATGGAAAAATACATGAGTCAGGTGCAGAGCCTGGCCTTCACCAGAGAGACACACCTGCGCAAGTTCTCCCGGCTTATGAGTTACAATCTGCGTCAGGAGATGGAGAGCCTCAGGTGTCTACTGGAATCCACACAATCTCCTGTTGTTTTCTGCCACAATGACTTACAAGAAGGAAACATCTTGCTTTTGAGTGGCCGGGAGAACATGGACAAGCAGAAACTCATGTTGATTGACTTTGAGTACAGCAGCTACAACTACAGAGGATTTGACATCGGAAACTTCTTCTGTGAGTGGACCTATGACTACACCTGCGACGTGTCTCCATACTTCAAAACAACCACCAAGAATTACCCCACCAAAGCTCAGCAGATGCATTTCTTCAAAAGCTACTTGTTGGAGTATGACCCAGGAATAGCGAACCTGGGTGAGGAAGATCAGCTGAAACTCAGAGAGGACATGTTGGTGGAAGTTAACAGGTTTGCCCTTGCCTCCCACTTCTTCTGGGGTCTGTGGTCCATAATCCAGGCGCGAATATCCACCATCGAGTTTGGCTATCTGGACTATGCCATGGCCAGGTTTGACTCGTACTTTGAGCTGAAGAAGGAGCTGGGCATTTGAATTAATGCTCTAGGGACACAGAACAGAGGGACAGCTGCTGCTCTTAAGTCTTAAGCTGAAAGGAGCAAAGTGGAGACCAATGACCTGGCTTTCACTAGAAAGAGGGGTGCTTTGCTACTGTAATGGCTACAAGGTGCTGCATGGACCAAAACCAGTGCCACTTACCTTCACTCTGCATCAGGCCCGATGTATTGAATAGTGTGCCATGCCTTGCTTCTCAGTGTTAACCATTTTGAGCTCCAATTTTTTTCATTCACACCTGCCTGGTTGTAAAAGCTTTAGGGCAGACAAAAGATAGATGATAATAATGTCAGCAAAAcaacatgaaaaaatataaatccaGTATAAATACTTGGCTGCGCAGATAGACAAACATATCATATTATACTGCACTAACTCTAACTAGAAGCTAAGCTGCACCAGTCTGTGGTGGAAAAGTACTCGACCCTGAAGTGCCACGTGTGgcatttttattgcagtagGCAATACTCCGTTCTGTTATATTTACAGCCAATGGTAGGAAATGTGAATGAATGAGGTTCAGATACATGGACCTCAAGCTAAAAAGCGGTACAACAGATCAAACTCTGTTGGCACTGTAGATTTAACGATTTCCAGTGTTGTGGGATATTTTTACACTCATCCAACTTTTTATGTGAAGTTTTACAATCCTTAATATTGTGGCTTtacctcttctttttctctactTGAACAACCATTAgctgtttattttctttctgtggCAGTAGGTCAATAGAGCAATAGAGTGAAAAACAGATATCCTGTGGGACTGGGCCATCTGCGTCTGAGTGTGATTTGTTATTACATGAGAAAAACACTGAGTCGTAACAGCTAGTTCTATTAGCTTTACTGGCTCATCCAAATTGTGCATACAGTGGTAACTGTCAAATTAAATGTCGTGTCACTTAATGACAATCTTTCCcttttgaaatcatttttttatataccagcttgtatatttttactttttagactGCAAGATCATTTTGTAGAATGTTTCCTTTCAGTGTGTATTACCTTGTAATAACAGTTAAAACTGGACACTACTTctctgtgattattttttttttaaacctggtATGTATGTACTAAACTGTGAtaaatatttcactttttttttacaatctaaGCTATACTATATTTTTGAGTATCTTGTTATAATATTTACTTGCAAGTGCTGAGACAGTGTATTAATTCTGCTAACATTACTGTGAAGGTCACTCTTTGTACCGGTCCCTAAAGAAAGTACTGGTCGGTCTATAAAGAACTTTCTCTTTCCTTGAATGGAAgatgtgttttttcttaataaGAAAGTTGCGCTCTTTGAAAGAATTGAAATCAATTTTCTTTATAATCACCAGTGTAATATCTAAGTATTAATTCCACATATTTAAATCTCTTTaaacagtaatattaattctGTCAGTGTTTTGGTATCTACAACCAGCTAGAGTTGGGTGAATGTAATGAAGCATAATGTATAAGTCATATCCTATAATGTCAGACATGAACCTGTCCCAACTCCCCAGGCCGTGTAAGGATATGTGTGTACAGTTCTATGGGGTGATTTCAAATCATTCTACAGATTGCTCTCTGTGTATTGTAATGTAGTTATGCtatacttctttaaaaagggAGAAGCTTTTTCATTCCTTTGCAAACTTCATCAGTGTTCTGTAATTATGCAGACTGTGCTTATAAACGGTAAataaaattatgcaaaaaatgataaaatg

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K14156 CHK; choline/ethanolamine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215891 lncRNA upstream 44510 18428155 ~ 18428426 (+) True G159274
XR_002651207.1 lncRNA upstream 58986 18413361 ~ 18413950 (+) True LOC111194744
TU215889 lncRNA upstream 61000 18411312 ~ 18411936 (+) True G159272
TU215773 lncRNA upstream 344507 18114005 ~ 18128429 (+) True G159184
TU215770 lncRNA upstream 363397 18108163 ~ 18109539 (+) True G159182
TU215933 lncRNA downstream 16885 18508411 ~ 18508695 (+) True G159298
TU215998 lncRNA downstream 121638 18613164 ~ 18615494 (+) True G159344
TU216004 lncRNA downstream 138944 18630470 ~ 18630853 (+) True G159347
TU216006 lncRNA downstream 160924 18652450 ~ 18652676 (+) True G159349
TU216007 lncRNA downstream 161231 18652757 ~ 18657402 (+) True G159350
XM_015607604.2 mRNA upstream 4657 18462098 ~ 18468279 (+) True kmt5b
XM_022679695.1 mRNA upstream 37821 18415528 ~ 18435115 (+) False arpin
XM_007256240.3 mRNA upstream 37821 18424250 ~ 18435115 (+) False arpin
XM_022679696.1 mRNA upstream 37821 18426393 ~ 18435115 (+) False arpin
XM_007256237.3 mRNA upstream 37821 18429751 ~ 18435115 (+) False arpin
XM_022679698.1 mRNA downstream 4568 18496094 ~ 18500819 (+) True LOC111194773
XM_022679978.1 mRNA downstream 34002 18525528 ~ 18576420 (+) False necab2
XM_007256219.3 mRNA downstream 271159 18762685 ~ 18813328 (+) True ranbp10
XM_015607589.2 mRNA downstream 386609 18878135 ~ 18980992 (+) False ripor1
XM_022679713.1 mRNA downstream 413236 18904762 ~ 18980992 (+) True ripor1
XR_002651250.1 other upstream 1283685 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 1283685 17177675 ~ 17189251 (+) True zwilch
trnal-cag_11 other upstream 1709328 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 2093113 16379259 ~ 16379823 (+) True G158779
TU214760 other upstream 3336738 15133947 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 34860 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 34860 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 34860 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 1693990 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 2245072 20736598 ~ 20737049 (+) True G159728

Expression Profile