RNA id: XM_022679696.1


Basic Information

Item Value
RNA id XM_022679696.1
length 1178
RNA type mRNA
GC content 0.42
exon number 6
gene id arpin
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18415527 ~ 18435115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATGTGGTTTATTCACCAAAAACAAATCACATACAGTTTTATGCTGAGAAATGCCAAAATATGTAAATTGGTTGCCACAGTAAAACACTACCACAAAATATTCACTGTTAATAGCTTAGAAACCACAAGCTGAAGTTATGTAACAGATTCTCACTGAACCGGAGACTGTGGATAATAACTGGGCCTGTCTCTGACATTCCCTTTTAATATTCAAACCACTGGAGCTTTGGCCTGGTGTATGGTTTTAATGTTCTATCGAAAGATGAATGTTCAGCCGAACTTCAACCTTCAACCTTGCACAGTCGGCTGAAATAGGTTTTCCTGTGGCATCTCCTTGTGGTCTGTCcacttttttttagtctttaatCCTGAATGCATGCTCTATTCCCAAGGAAATGCATCCCAGTCACTGAAGTATTTAGCTGGCTTCATGATGCTTGTGTTCAGCTCATCTTCACATATAGGCGCTGGGGTGATTCTGGAGGGGACTTTTATTGATGTGTCTCGTCATGCAATCACAGACACCAACAACAGAAAGGAGCGCTATTATATTCTGTATGTGAAGCCTAGCCGAATCCACTGCAGAAAGTATGATGCCAAAGGAAATGAGATCGAGCCCAATTTCAGTGAGACCAAGAAGGTCAACACAGGTTATCTTATGTCATCTTACAAACAGGAGGCCAAAGGTGAGTCAGATAGACTTACTGAAGACCAGCTGAAGGACATTGTGAACAAGAAGGAGCTAATTACAGTAACAGAGAAGCACTGCCCCAAACAAGCATTTGCCTTCTGGATACTGGAGACTGAGATGGAGAAGGTGGAGCTGGAAAGTGGCCAAGAAATCCGTCTAAAAACCAAGGGAGATGGCCCCTTTATCTTCTCCTTTGCCAAGGTGGATGCCGGAACAGTGACAAAGTGCAATTTTGCTGGAGATGAGCAGACTGGGGCATCGTGGACTGACAAAATAATGGCCAACAAAGCAGATACACTGAGTGATTCAAAACCGGCTGAGCAGGGCCAAGGAGCTGATGATGAAGAGTGGGATGACTGATCAGTACACAGAAGAAGACAAATGTATGAATACACTTTACATATGAATATTGACACTTTACGTATGAAGTTGGAATTACATAAACCTTTGATATGTGCCATAATAAAAgccatttttttacaaaaa

Function

GO:

id name namespace
GO:0030027 lamellipodium cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651207.1 lncRNA upstream 12443 18413361 ~ 18413950 (+) True LOC111194744
TU215889 lncRNA upstream 14457 18411312 ~ 18411936 (+) True G159272
TU215773 lncRNA upstream 297964 18114005 ~ 18128429 (+) True G159184
TU215770 lncRNA upstream 316854 18108163 ~ 18109539 (+) True G159182
TU215695 lncRNA upstream 429665 17995698 ~ 17996728 (+) True G159129
TU215933 lncRNA downstream 73296 18508411 ~ 18508695 (+) True G159298
TU215998 lncRNA downstream 178049 18613164 ~ 18615494 (+) True G159344
TU216004 lncRNA downstream 195355 18630470 ~ 18630853 (+) True G159347
TU216006 lncRNA downstream 217335 18652450 ~ 18652676 (+) True G159349
TU216007 lncRNA downstream 217642 18652757 ~ 18657402 (+) True G159350
XM_015607578.2 mRNA upstream 395 18415527 ~ 18425998 (+) True arpin
XM_022679691.1 mRNA upstream 160590 18261165 ~ 18265803 (+) True LOC103028633
XM_007255961.3 mRNA upstream 261669 18134717 ~ 18164724 (+) True cftr
XM_015607513.2 mRNA upstream 390697 18030488 ~ 18035696 (+) True LOC107197792
XM_007255967.3 mRNA upstream 396388 18023904 ~ 18030005 (+) False wee2
XM_015607604.2 mRNA downstream 26983 18462098 ~ 18468279 (+) True kmt5b
XM_007256233.3 mRNA downstream 37821 18472936 ~ 18491526 (+) True chka
XM_015607592.2 mRNA downstream 37821 18472936 ~ 18491526 (+) False chka
XM_022679698.1 mRNA downstream 60979 18496094 ~ 18500819 (+) True LOC111194773
XM_022679978.1 mRNA downstream 90413 18525528 ~ 18576420 (+) False necab2
XR_002651250.1 other upstream 1237142 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 1237142 17177675 ~ 17189251 (+) True zwilch
trnal-cag_11 other upstream 1662785 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 2046570 16379259 ~ 16379823 (+) True G158779
TU214760 other upstream 3290195 15133947 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 91271 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 91271 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 91271 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 1750401 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 2301483 20736598 ~ 20737049 (+) True G159728

Expression Profile