RNA id: XM_007259531.3


Basic Information

Item Value
RNA id XM_007259531.3
length 5332
RNA type mRNA
GC content 0.47
exon number 6
gene id nectin1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 24219859 ~ 24614929 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCCTGCTCTCCTGCCTGCCTGCGCACTGGATGCAGCGCCTGGGCTTCACCGCTCTCTGCTTGTGCTAGAGCGCCGGGTCTGGATCTCTCCAGCTGGACACACAGCAGCTTCTCCTGAACtcccccgctctctctctctctctccccgcgCCTGTCCCAACACTTCTGGACTGCTCTGTTCCCCCCATTCAGATCCTGCTGGAGAAGGTGGGCTTTACTCGAGCCGTCGAGCCGCCGGAGTGAGAGGAGCTCTTTACCTGTCCATCCaggaaaaagaggagaagaaactACTGAGAGCTTCGTGCTGTGgagtcactctctctttctttctttctttcgggaaaaaaaaagatacgcAAACTGTTCGCGCAGTTTAGCGCATCTTATCTGCCGCATTGATCCGGTCTGTTGATAGCTCTGATTGAGGGGTGTTGGATATCTTTGGACGGAGGGGGGCTGGCTGATCGTCCTGAAGTTtgcattgattgattgattgtgcGGGAGATTAGTGCGGGAGATTGTCCACGGAGATTGTCCACGCATCTCAGATCGGATATTTTGGTGCGTAAAAATACACGCGAAGCATGGCGACGCTGGCGAGTTTTTggatactgctgctgctgttgatgaACGCATCAAtgGTGAACGGACAGTCGGTACAGATGGACCTGGTGAAGTCCGGCTTCGTGGGCTCCATGGTGGAGCTCCGCTGCCAGTTCATGAACAGTAAGCCCCCAGTGAAGATCTCTCAGGTCACCTGGCAGAAATTCTTCAATGGCACCAAGCAAAACGTAGCCATCGCCAACCCGGCACTGGGTGTGTCGGTGCTGCCGCCGTTTAAGGACCGCGTGAGCTTCAAGCACCCGGCCGTACGCCAGCGGACGCCATCGCTGGAGGACACCACCATCGTCTTCAACAGTCTGCGGCTCTCTGATGAGGCGGCGTACATCTGCGAATACACCACATTCCCCGCCGGAAACAGGGAGAACACCGTCAACCTCACCGTCTACGCTCGTCCTGTCACCCGGATGACCCTCACCACGCCCACCATCATCGCCCGGGGCCAGAAGCGCAAGATGACGGTGGCCACCTGCCTTTCAGCCAATGGGAAGCCTCCCAGTGTCATCAAATGGGACACTAAACTGAAGGGCGAGCCCACCTTCCAGGAGACCCGCAACCCCAACGGCACAGTGACCGTACGCAGCAACTACGTGGTGGTCCCCAGCCGTGAAACCCACCGGCAGAAGCTCACCTGCATCGTCACGTACCACACCGAGCGCTTCACCGACAGCGTCGTCCTCAACGTCCAGTATGAACCCGAGGTGAAGATCGAAGGTTTTGATGGGAACTGGTACCTCAACCGACAGGACGTGAAGCTCACCTGCAACGCTGACGCTAACCCGCCCGTTACTGTGTACCAGTGGAAGCTGCTGAATGGATCGCTGCCTAAAAACGTGGAGATCAAAAACAACACTCTGTTTTTTAAGGGGCCAGTGACGTACGAACTGGGCGGGACTTACGTGTGTGACGCCACCAACAGCATCGGCACGCGCTCCGGCCTGGTGGAGGTTAATGTGACAGAATTCCCTGTCTACCCATCTCCCGATGGCCGCGGAATCCCACAGGAGCAGCACAGCTCGGGCGCCGCTATTGGGGGCGCCGTGGGTGGCGTAGCTCTGCTGGCAGGAGCCGCCACGCTGCTGTTCATCTTCCTGCGGCGTCGCCAGCGTACCTTCAAGGGAGACTACAGCACCAAGAAGCACGTATTCGGCAACGGCTACAGCAAAGCCGGCGGCctctccacccacccaccagcGCCCAAGAGCCTGCAGTACCCGGATGACTCGGACGACGAGAAGAAGCCGGCACAGATCGGCGGCGGTGGTGGAACTGGGGGTTTCGAGACTGGTGAGCGAGACTTCGACGGAAACTCGGAGGACCTGAAGCGGCCATACTTCACTGTGGACGAAGGCGAGAGCCGCGACTACGACGAACGGACTCTCGCCTTCCAGTACGAACCCGAGGCCGAAATCACTGACGACATGGTGTCCCAGACCGACGGCTCTGTCATTTCAAAGAAAGAATGGTATGTGTAGTAAGGAGGCAACTGCAGCAGcgacaagagagagaaatataaaaaattacgAGAGAAAAAGTATCTACAAATCTTATGCTCCTTCCCGCATCTGACCGCACCCCTTCACAACAACGCACCTCCATCACTAGAAATCTCCACCCTCCCTCCTATCCTCCCTTGCTCCATCTGTCCCTCCGTACGTCCAACCGTTCGTCCATCCACTCcatctccctcactccctccacCTGGTGAAACTCCGCCCCCATCAGAACCCATCTAACTGAACattagagaaaaagaaaacgaAAAACAAAAACGCTTTGAGAAAACGTTTGAAAAAACCACATCAACATCACGGTATGCCCACAGTACGCTACTAGGTTACCCTGCTACGTCAGCGAAAAAGAAGCGGGATCATGGGATCATTGACTAATGCCAATCACCATTGACTATTGAAGCCGCACAGGCTGGTTGCTTGAAAATTTTATGGTGTATTATTAcctttttttgtctcattttcttTGAAGTTAttctaaatgtattaaatgtgtaaaaagagACTTTGTAACTGTTTTAGGATGGGGGTATTTCTCATCTTGTGAAAGTCTTACACTGGATGTAtgatactttttttgttttgaatatGTTTCAAAAAAAGTTCtggtttttatttgcttttatcatttttagtaAGATCCAGTTTTTTTAATGGGGTGTTGGTTATCTGAAACTGTGGAGgttaaaaatattagaaatccTCTTGTATAAATGAATAGTTACGAGATATGTGGTCAGTCGTTTCAGAGTGGACAGTAGAAGACCGTGGAAGCCGTTTCGTCTTAGAGGTTTGATCTCTGTAGTGCAGCTCTTCAATCTGTCAGCCAGTAGAGGGAGGAGCCAGAAGACTTTGGCCTGGATCAGTGGGAGTAGGTGGGGTCTAAAAGCTGCAACATAACACTTAGCATAACACACTGCGGAACTGACTCTACCGCCTTTTACGTCGACAGAGAGAGTCTCTGCGAAAGTATTGATTCCAACAGCTGGGGTCGCAGGTTTTGGGTCACGGGTTTTGGGTTGTCTGGCTCGACGCTGACGGAAAGCTAAGGGGGCGTGTCTCCGGGTTTTAGCCATATGCACCGAACCATACTCAGGCAGAAAAGGCAGAGACTAGTGTGCAGAGCCTGTCCTGACTCCCTTCCCATGCTAATACAGATGGGACCGGGCCAGTTCACCGGCCACTTTAAAAAACGTTGCACGTTGAACAGTATTCACGTGAACAAAGCCTGTTTCTAACCTGCAACACCAACACTTGAAAGGTACAAAGGTACAACCCTGTGTAAAAGGATCTCAAAGCAAAGACTAGACTAGTCTAAAGTCCAAGTCTTGCTTGTCCAAGTCTTTTGGCGAGGCACAAGGTTGGCGTGACCATTTGTAACATAACTGATGCTCTACAGAAGGGAAAATTTGACGTTGTAAATAGTAACAGAGTATGGCTCAGTATGGTAACTTTTTGTCACATGCATTTACGTACGTCCTCAAAACATGGAAAACTATATCCGGACGCTTCGGATGGACATCCTGAAGTGTAATTTTGAAGTATCGATATTTATGACATATCGGAATTTCAAAACTAGAGCTTTCGGAATGGTGGAAATCATGTCAACAGCCCATCGAAACGCTGAAATCAAAGGCTTTTAAAGacttttcattattattgttgttgtctGTCAAGGTGTTTTGCTCATttccgtttttttattttaacatcagACCAAGGCAAAAATACTATAGCTCCGCCTACTGGACATGAAAACAACACTGCCATTACCACTATCAACACCACCACAGATGGGAATAGAACCACGGAACGATGATCGGAACCACTCTTCCTGCTGCCAGTTACTGTGGTTCACACCGTTATTGCATCGTAGAAGTATCAAGTAGTACAAATCAAGCATTGTTTTGGGGAGAGTCATCAAACAACAACCAACAGACATCAATCATCCAACAAAAACCCATCTGGATGAAAAGATACAAATGTATACGCCTTATTTTCTTGTATGTATctacattttttgttatatgttcatatgtttttttttttacgtgtgaccgcatgtatgaatttttttcagcatatttttgtattactattattttttttttttgcattcagcCAGAGCTGCGATCTTCTGTGCAGTTCTGTCGTGCTGTTCAAGCTGGAAGCCCTGCCAGCATGATGGGCACTGGGATTTGCCGTTGGTGAATTGGTGGGCATCTGGCCCACTCTGCTAACACAGTTTTATCCCCACAGACAAAAACGTTTCTAGCATTTTCCACAACATGTTATTTCCTCTTCAAAAAACCCtcaatttaaatgcatttcaatTCATCACTGCCTAACAGTGAAAGGCGTAACTCTTTCTGCCTCTAAAGATGAACACTCAAAGACAATCTTTAGGGTTACAGATGGACAAGATAACCACGCTGCAGATGATGGCCACAGAAAAGGGcaagttagcattagcgttTGGGCTGCATGGTATTGGAATGACAttgaaatgacaaaataaatgtcattgtaatagttatttttttctgtggtatatgttttttttttaccaaattgtaccAAATTCCACCAGAAGTCAATGACCCAATGATATTGGATGATGTCATGATCTTAATTACTAttcaaaattggaaaaaaattgtCCTCTggtaaatatataagtaaaaataataattaaataaaaaatatatatttctcttcaTCTTTAATTAAATTTGCCTTTCATAACATTCCACATTCTGCAATGTGGCTGTCGCAGTCTCCCATGTTGTGATGATCACTATGCTGAAACGTTGTATTGAGCAGCCCTAATTATCTCTCAGATTTGATTAACACATGAATTATTTGgaccaatcaaaaaaaaaaagcgaaatTATTCccacacgaaaaaaaaaaaagttcacagtCATTCCTTTGTGTTGTTTCATTGTAATAATGATTCTAGCTTGTTGGGTGTTCTACGAGTCCTACGACTTCAAGTTTTACAAATGGCAGTGCCTATGATATATGTGAGatgtaatgtatttttcttttttttaaacaaaatgtctaaaaatatgTGTACAGAATGTTTGCTCTGAACTGAAAACTATCTGAAATTTTTCGATTTTCTCTGAAACCTTTGTCGACCctgaataagcatctgttgtacactcttaaaaataaaggttcctTAATGGTT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06081 NECTIN1, PVRL1, CD111; poliovirus receptor-related protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217248 lncRNA upstream 39908 24179663 ~ 24179956 (+) True G160321
TU217241 lncRNA upstream 76753 24142398 ~ 24143111 (+) True G160314
TU217235 lncRNA upstream 99772 24119879 ~ 24120092 (+) True G160308
TU217161 lncRNA upstream 304564 23861943 ~ 23915300 (+) True G160253
TU217113 lncRNA upstream 967047 23252077 ~ 23252817 (+) True G160216
TU217291 lncRNA downstream 181056 24584197 ~ 24587185 (+) True G160349
TU217298 lncRNA downstream 212565 24615706 ~ 24619083 (+) True G160355
TU217299 lncRNA downstream 213750 24616891 ~ 24619513 (+) False G160355
TU217300 lncRNA downstream 224301 24627442 ~ 24627919 (+) True G160356
TU217312 lncRNA downstream 460104 24863245 ~ 24863993 (+) True G160368
XM_007231088.3 mRNA upstream 269976 23943693 ~ 23949888 (+) True LOC103024981
XM_022679758.1 mRNA upstream 306601 23747742 ~ 23913263 (+) True LOC103025495
XM_022679759.1 mRNA upstream 306601 23747742 ~ 23913263 (+) False LOC103025495
XM_022679760.1 mRNA upstream 306601 23747742 ~ 23913263 (+) False LOC103025495
XM_007231092.2 mRNA upstream 546728 23377869 ~ 23673136 (+) True LOC103026225
XM_007259535.3 mRNA downstream 665770 25068911 ~ 25080426 (+) True cxcr5
XM_007259546.3 mRNA downstream 1080803 25483944 ~ 25500609 (+) True LOC103023437
XM_022679770.1 mRNA downstream 1100936 25504077 ~ 25510167 (+) True LOC103024914
XM_022679768.1 mRNA downstream 1107182 25510323 ~ 25521145 (+) True dhx34
XM_007235657.3 mRNA downstream 1146287 25549428 ~ 25564612 (+) True bicra
TU217233 other upstream 100039 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 1365783 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 1596557 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 2067079 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 3208070 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 2346238 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 2502103 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 2706530 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 4218987 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 4342555 28745696 ~ 28759007 (+) False fam219b

Expression Profile