RNA id: XM_015600786.2


Basic Information

Item Value
RNA id XM_015600786.2
length 1100
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC103045871
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34071159 ~ 34092737 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTTGGAGCTTTCTTCATTGAAACTCTGCTGCTGAAGATGGAGCAGCTAACGATCCCGGCCAGAGTCCTGCTGTTTATCTGCCTAATATTCCCCTGCCAGGGAGCTGAGCGAGCCAAACAGAGAGGAATAAGACAGAAGGACATGGAGTACATGGAGAAATACTCCAGCTGCCTGCAGGGTCCAGCAGGAATCCCGGGCAAGGAGGGAAATCCGGGAGTGAACGGGATCCCGGGAACGCCAGGTGTGCCGGGAAGGGACGGGGCCAAGGGGGAGAAGGGGGAATGCGTCAGTGAGATATTCGAGGAGCCCTGGAGACCCAACTACAAACAGTGCGCCTGGAACTCCCTCAACTACGGCATCGACCTGGGCAAAATCACAGAGTGCACGTTCACCAAGCTGCGCTCTGACAGCGCCCTGCGTGTGCTCTTCAGCGGCTCGCTCAGGCTCAAGTGCAAGACGGCCTGCTGTCAGCGCTGGTACTTCACCTTTAACGGAGCGGAATGCTCCGGGCCACTGCCCATAGAGTCCATCATCTATCTGGACCAAGGCAGCCCAGAACTCAACTCCACCATCAACATTCACCGGACCTCGTCAGTGGAAGGCTTGTGCGAGGGCGTTCGAGCTGGACTGGTGGACGTGGCTATCTGGGTGGGGACCTGCGGGGACTATCCCCGGGGAGACGCCTCCACCGGCTGGAATTCCGTCTCCAGGATGATCATTGAAGAACTGCCCAAATGACCTCGGACCTCCTCCATAATCCCCTGATTCAGATTATAAATCTGTGTGCAGATGTTCAGCAGAACGGGCTGGAACCAGCAGATCATCAACCACCATTACTGGAGAGCAGCTAAGGGTCCAAGTAGTTATTAGTAAATCAGCTTGAGAAGGTCCCGACACTTGAAGCACGAAGCAACTCTGTAGACTGTACAGTGTCCTGTCTTTTTTAtacgttttatatattttttgttattgggTTTTATATACAGTCAAGGCAGAATATTATGATACACTTACTGTCCAtgttatcagctccactgatcatataatgtatctgtctctctatttattttattattctacttcTTTAattgatgccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219919 lncRNA upstream 184315 33837477 ~ 33886844 (+) False G162336
TU219918 lncRNA upstream 184315 33852212 ~ 33886844 (+) True G162336
TU219903 lncRNA upstream 273485 33797440 ~ 33797674 (+) True G162329
TU219851 lncRNA upstream 365770 33704083 ~ 33705389 (+) True G162282
TU219850 lncRNA upstream 402662 33661839 ~ 33668497 (+) True G162281
TU219965 lncRNA downstream 1176 34093913 ~ 34097597 (+) True G162373
TU220004 lncRNA downstream 77663 34170400 ~ 34177227 (+) False G162403
TU220005 lncRNA downstream 77663 34170400 ~ 34171317 (+) True G162403
TU220007 lncRNA downstream 110166 34202903 ~ 34203106 (+) True G162405
TU220010 lncRNA downstream 127375 34220112 ~ 34221336 (+) True G162408
XM_022679409.1 mRNA upstream 73715 33204707 ~ 33997444 (+) True LOC103027235
XM_022679881.1 mRNA upstream 1028023 32918143 ~ 33043136 (+) True LOC103043655
XM_022679879.1 mRNA upstream 1155510 32905654 ~ 32915649 (+) True LOC103039334
XM_022679880.1 mRNA upstream 1155510 32905654 ~ 32915649 (+) False LOC103039334
XM_007233718.3 mRNA upstream 1191903 32782074 ~ 32879256 (+) True LOC103040053
XM_022679885.1 mRNA downstream 26056 34118793 ~ 34161754 (+) True LOC111194818
XM_022679886.1 mRNA downstream 26056 34118793 ~ 34161754 (+) False LOC111194818
XM_022679887.1 mRNA downstream 31889 34124626 ~ 34161754 (+) False LOC111194818
XM_022679889.1 mRNA downstream 83371 34176108 ~ 34199772 (+) True LOC103028011
XM_015604004.2 mRNA downstream 121149 34213886 ~ 34217803 (+) True LOC103027681
TU219593 other upstream 1351884 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 1776130 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 1922969 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 3192847 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 2661448 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 3317255 37409992 ~ 37411969 (+) True G163105

Expression Profile