RNA id: XM_022679493.1


Basic Information

Item Value
RNA id XM_022679493.1
length 3956
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC103025504
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 3858506 ~ 3899215 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGATGAACCTGATAAAATCGACAGTGGCGTGAAGACCTGAACGTTTATGCCGTGTGATGCAACAGCTAAGCAAGCTGTGTGGATGGCTGATAATTGCTGTTGTCATTGGAAGATAACCATGGGAGGAGCACCCTGACCGAGACGGGAAAGTGCATCAAGAACCGAAATCATGGCTGCCCATCGAATTCGCTCAGCAAACAACAATAATGCTCTTCCTCGCTGCAAGTCTGAGGGAGCACTTATTGATCTGAGTGAAGGAGTTTCAGAAGCCACCCTCACTGATGTTAAAGTGCCTACTCCTAGTGCCTTGCGGCTGGATACAACTGCCTCAATTGGTTCTGCAAGAGAAGTTATTGCCATTAAGGATTACTGTCCATCAAGCTTCACTACCTTAAAGTTTTCTAAAGGAGACTGTCTCTATGTTCTCGACACATCTGGTGGCGAGTGGTGGTATGCCCACAATAATACGGAGATGGGTTACATTCCAGCAGCCTACGTTCAGCCTATTAAACATCGAGACTCTTCGTTCTGCGACAGTGGCATGATCGACAGTATCGGAGATGTTTCTAAGGATGGGGCCAAAGAAGTGGAGCAGCGTGGGGAGTGGTCTGCATTCACACAACCTGCTCTTCCTCAAAACGGGAATCCTTTTGTGACGAGGCGGATGTCTACCAATCCTTTCCTTGATTGTTCCTTGCAAGGCACAGCTGATCAAAACCAGAGTGTCCAGAGTTCTACCGACCTCCTCAGATTGGACTCTAAGGCCAGCAGCACTGTTAACATCAACGGTTTTGGGAGTGATATATTTGACAGAAACTTCTTGTCTCCGAACCTGGGGAAGAGTCAAGTTCTCCGAAGAGACAACCCATTCTACAGAAGCAAGCGCTGCTACAGCTTGTCAGAACTGTCTGTCTTGCAAGCCCAAGCAGACTCACCTGAAGAGTTTGTAAGCTTCTTTGGTGGTTTGAAAGCGCCTGCACCTGAAGAGTTTCAGAGCCGTGAAGACTTTAAAAGTGCCTGGTTAAGCCATAGAAAGCTGGCAAGGTCCTGCCACAACCTGGATTCCATTGGACAAAATCCTGGCTGGGGTCAAACGCAGCCCATCGAGACTAACATCGTATGCAAACTGGACAGTTCAGGTGGTGCTGTTCAATTACCCAACACTAGCATCAGCGTCCATGTTCCTGAGGGCCATGTCTCATCAGGGGACACTCAGCAAATATCTTTGAAAGCTTTACTAGATCCACCACTGGAGCTGAACAATGACAAATGCACTACTGTGAGCCCAGTGGTGGAGGTTAAACTCAGTAATATGGAGACTAAAACCACCATAACCTTAGAGATGAAAGTGTCTGTGGTGGTAAAGATGGAGAGTCGACAAAAGGCCGAAGTGATCTGCGTCAGGAGCGACTGCAAGGAGGGACCGTACATTCCAGTTCCTCATGCCTACATGTACGGAGATACTGTTCAAGTAGCCTTGGACAATTTAGAGCCGTGTATGTATGTGTCAGTTGTTGCTCAAGCCCAAGTCGTAGCCCCGTACGCTACGGTCTGGGAGCATGTAGTGAAGAAGGTCACGCTTGGCGTATATGGCCCCAAACACATCCACCCATCCTTCAAATCAGTGGTCGCCATCTTTGGTCATGACTGCGCTCCAAAAACCTTACTAGTAAGCGAAGTTAAGAAGCAGTCACACTGCACCCCACCAGTGACCCTGCAGTTGTGGGGCAAGCACCAGTTTGTCCTCGCAAAGCCTCAAGACCTTCAAGTCGGGATGTACTCCAACATGTTAAACTTCGAAGTGAAGGCCAGTGAGCAGGAAAGGATAGTAAGAGGCTTCCAACTGAAACTTGGCAAAGTGTCCCGACTCATCTACATGATATCTGCCCGTGACCCAGCAAAAATCTCAGACTTCACTCTGCGGGTTCAGGTCAAAGACGACCACGATTGCAGCCTCGCCCAGTTCTGCGTCCAAACTCCCACGCCTCCCCCGAAGGCAGCCACCAGGGGCTCAGTGCAGAGACGCTTCCTGAAGAAGAAGGAAGTCAACAAAATCATCCTGTCTCCTCTTGTCTCAACCATAAAGTACCCTGTGTTCCAGGATAGACCCATCAAAAACCTCAAATTTGGAAAGCTGTTGAAAACCGTAATCAGACAGTCCAAGAACCAGTACCTGCTGGAGTATCTGAAAGGAGATGTGGTGGCACTTCTGTGCGAGGAAAAAGTCAAACTAAAGGGGCATCTCTGGACCAAAGAGTGGTATATCGGCTTCTGCCACAGCAGAATCGGGCTGGTACACGCAAAGAACGTTCTAATAATGGGGAAGGTCAAACCGCCTAATTATAAGGGGGCCGATTTGACATCTTCTGTGCTCCTGGACCAAATTCTCCGGCCCTGCAAATGCCTCACGTACATCTACGCCTCAGTGAGGACTATACTGATGGAAAACGTGGGGAGCTGGAGAGCATTCGCTGATGCCTTGGGCTATGTCAACCTTCCTCTGACACACTTTTGTCGAACAGAGCCAGACAGCGAGGCTGAGAAAGTGGCTTCTGTTCTGGAGAAGCTTAAGGAGGACTGCAATGCTGTGGAGGGAAAAGAAAGGAAGTCGTTCCAGAAGGAGCTCATGTCGGCTCTGCTGAAGATGGACTGTCAGGGTCTGGTGGCTCGGCTGGTGAAGGACTTCGCTCTGTTGACCACAGCAGTGGAGGTGGCCGGCCGGTGGAGGGAACTGGctgaaaaactggccaaagtaTCTCGAAAGCAAATGGACGCTTACGAGGCTcctcacagagacagagacggCGTGGTGGACAGTGAGGCCATGTGGAAGCCAGCTTACGACTTCCTGGTGACGTGGGCAGCCCAGGTCGGGGATAGCTACCGGGACGTGCTGCAGGAACTTCACGCAGGCCTGGACAAAATGAAGAACCCCATCACCAAACGGTGGAGACACTTGACAGGAACCCTCATCCTGGTTAACTGTCTGGACCTCTTACGGAGCTCCGCCTTCAGTCTGGCCCCTCAGGACGACTGTGCTGTATAGTCAAGGTCAAAGGCTTTGGAGGTGAATTACATCATCAGTATGCTGAGGTTAAGTGGATCAGGGACAACAGCCTCAGCAAGATACCCTGAGGTCAACATGAACTTGTGGTCGATCCAAATGTGTTCAAAGTGTGGAAAACTTTTCAGAGAAAGAGCAGAGTTTCTTACATTTGAACATTTCAAATGGAAAAGAGATCAACTCTGAAACCAAACTACTGACTGAggaaataatgtgtaaataagtGTATGGAGCAAAGTTATCAAACATGCATTATTTGTTTGTCTGAGAAACACTGTGTCGGCATGAGCTCAAAGCAAAGCTTGGATCAATGTAACACTGACTCTAATCCAACTTTAAAAGGATTCTTACCTTGTTTAACATTTGAGCCCTTTGAATAACTTTCTATGTCTAATTTCTAGGCACctcaaacatttttatatgaaCTTTGCAATTGATTTGTTGAAACTACTTCAAATAAGTCCTGGACTCCTAATGAACTCTATGAGCCCTACCTTACACCCTTTGCAAGTCACGTcttgatgcttattgctattttacacctGAAAACTCTATTTTCAAGCTTTCCTTACACCTGCGTCATTTATATAGCAACGGTGCTTGTAAATATACCctcactgatgggcgtggtggtctggaaattacctgtgttcagatacatttctggtgtattgctatcttggcaacggaaaatacaggtgcaccactgactgaatacaacctagacagacatcaacatCAGATATTCATGACGTAAATGACCTGCTGgcacaccttcacagtgtgaatgtcagtttcctctgctgagaagcgttggagACCTCCAGATAGCTTtcgcccctgaaatagcaatttgccaaagtcagagtgcacttggatcttaaagggaat

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0061462 protein localization to lysosome biological_process
GO:0034260 negative regulation of GTPase activity biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0010508 positive regulation of autophagy biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0030136 clathrin-coated vesicle cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0005634 nucleus cellular_component
GO:0005092 GDP-dissociation inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211505 lncRNA upstream 11786 3848455 ~ 3848872 (+) True G155978
TU211503 lncRNA upstream 13041 3846849 ~ 3847617 (+) True G155976
TU211494 lncRNA upstream 91331 3768573 ~ 3769327 (+) True G155967
TU211478 lncRNA upstream 183801 3676632 ~ 3676857 (+) True G155956
TU211470 lncRNA upstream 246295 3614134 ~ 3614363 (+) False LOC111194753
TU211515 lncRNA downstream 7779 3906994 ~ 3907195 (+) True G155985
TU211520 lncRNA downstream 31618 3930833 ~ 3932157 (+) False LOC103025196
TU211548 lncRNA downstream 61679 3960894 ~ 4005992 (+) True G156009
TU211600 lncRNA downstream 289291 4188506 ~ 4188789 (+) True G156050
TU211610 lncRNA downstream 346036 4245251 ~ 4245521 (+) True G156060
XM_022679492.1 mRNA upstream 246167 3611018 ~ 3614491 (+) True LOC111194753
XM_007230030.2 mRNA upstream 897107 2942774 ~ 2963551 (+) True ndufa10
XM_015606067.2 mRNA upstream 922588 2882827 ~ 2938070 (+) True LOC103044837
XM_022679486.1 mRNA upstream 1053904 2792039 ~ 2806754 (+) True parp9
XM_007232420.3 mRNA downstream 30116 3929331 ~ 3932163 (+) True LOC103025196
XM_022679498.1 mRNA downstream 78537 3977752 ~ 3999462 (+) True LOC103036562
XM_022679496.1 mRNA downstream 109111 4008326 ~ 4123480 (+) True LOC103036857
XM_022679497.1 mRNA downstream 109111 4008326 ~ 4122821 (+) False LOC103036857
XM_022679495.1 mRNA downstream 109289 4008504 ~ 4123480 (+) False LOC103036857
TU211262 other upstream 1105546 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 2591279 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 2592463 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 2592463 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 2645995 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 1257939 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 3473161 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 3488287 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 3701352 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 4670715 8569930 ~ 8570877 (+) True G157055

Expression Profile