RNA id: XM_015604004.2


Basic Information

Item Value
RNA id XM_015604004.2
length 861
RNA type mRNA
GC content 0.55
exon number 3
gene id LOC103027681
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34213886 ~ 34217803 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGAAGCAGTTGAGCAGAAAAGTGCGAGTGCTGTGTTGGGTCATGACGGCGCCCCAGTACCTGAAGACCAGAACTCAGCATGTCCGTGCGACCTGGGCTCAGCACTGCAACGCCGTGCTCTACATGAGCTCTGAGACCTCGGACTTCCCCACTGTGGGCCTCAACGTCTCCGAGGGCCGGGACCAGCTGTACTGGAAGACCATCCGCGCCCTCCAGTACATCCACACCCATCACCTCCACACCGCTGACTGGTTCCTCAAGGCGGATGACGACACGTTTGTTGTGATGGAGAACCTGCGGCGCTTCCTCTGCAGGCAGGACACTGAGCAGCCGGTCTACTTTGGCCACAGGTTCAGGGTTTTCATCAAGCAGGGCTACATGAGCGGTGGAGCAGGGTACGTCCTGAGCAGAGAGGCGCTGCGGAGGTTCATCCAGGGCTTCAGCTCGGGCCGGTGCACCCACACCAGCTCGGTGGAGGACTTGGCCCTGGGCCAGTGCATGGAGACCATGGGGGTGAAGGCTGGAGATTCCAGAGATGaggagcagagggaagcatttaACCCCTTCAGACCAGATCAGCACCTCCTAAATCCAGGCACCAAGAAACCAACCTTCGAATACAGCTACTACCCTAAAATACGAggCCCAGGCTGCTGCTCAGATTTTGCCATAAGCTTCCATTACATCAGACCAGAGCAGATGTATGAGCTGCAGTATTACACCTATCACCTGCATCCTTTCGGATACAAATACAGATTCAACCCTGCCGACACACTCAACTGCACAGCGGACTATTCACACAGTTAATACTCTAAACTAAAACGGGATTTTCTACATAACTCGGTGCTTATGATGTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220007 lncRNA upstream 10780 34202903 ~ 34203106 (+) True G162405
TU220004 lncRNA upstream 36659 34170400 ~ 34177227 (+) False G162403
TU220005 lncRNA upstream 42569 34170400 ~ 34171317 (+) True G162403
TU219965 lncRNA upstream 116289 34093913 ~ 34097597 (+) True G162373
TU219919 lncRNA upstream 327042 33837477 ~ 33886844 (+) False G162336
TU220010 lncRNA downstream 2309 34220112 ~ 34221336 (+) True G162408
TU220050 lncRNA downstream 181431 34399234 ~ 34399448 (+) True G162442
TU220132 lncRNA downstream 283797 34501600 ~ 34517219 (+) True G162505
TU220145 lncRNA downstream 437158 34654961 ~ 34655440 (+) True G162518
TU220162 lncRNA downstream 559404 34777207 ~ 34783691 (+) True G162530
XM_022679889.1 mRNA upstream 14114 34176108 ~ 34199772 (+) True LOC103028011
XM_022679885.1 mRNA upstream 52132 34118793 ~ 34161754 (+) True LOC111194818
XM_022679886.1 mRNA upstream 52132 34118793 ~ 34161754 (+) False LOC111194818
XM_022679887.1 mRNA upstream 52132 34124626 ~ 34161754 (+) False LOC111194818
XM_022679884.1 mRNA upstream 121149 34071159 ~ 34092737 (+) True LOC103045871
XM_022679893.1 mRNA downstream 82215 34300018 ~ 34315224 (+) True mios
XM_007242176.3 mRNA downstream 82215 34300018 ~ 34315224 (+) False mios
XM_022679894.1 mRNA downstream 101410 34319213 ~ 34349880 (+) True LOC103044586
XM_022679895.1 mRNA downstream 589703 34807506 ~ 34839027 (+) True pepd
XM_022679896.1 mRNA downstream 849515 35067318 ~ 35512777 (+) True chst8
TU219593 other upstream 1494611 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 1918857 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 2065696 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 3335574 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 2536382 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 3192189 37409992 ~ 37411969 (+) True G163105

Expression Profile