RNA id: XM_015604453.2


Basic Information

Item Value
RNA id XM_015604453.2
length 2439
RNA type mRNA
GC content 0.40
exon number 5
gene id dbndd1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6324821 ~ 6363149 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAAAGACTTTTAAGTAgattgtgtttgttgtttttgttaggTTAGCGAAGCGAGGAAAcctttattaatgtatttgtttaaagtgctGACTATGAAAGTTTCTGGAAAGCCTTGCCAGGCTTATTTTGTGCTGAATGGCTGGGAGTGTGGAGGATAGGAGGATCAGCAGGCACAGAGGAGGTGGAGAAAAGCTGATAAGAGGAGTGTGTTCCTCGCTTGTGTTTTGGTGGGAGTTGATACTCGTACTCACAGCtgctccctctttctttctttacctcTCTGTTTGTATTCTGACTGCTCCACACCcatgctgctgctgtagccAGCAGCTCCACACTCTCGGCTTACTGGATGGAGGCTCAGGGAGGGGCATCCAGCCCAGATCCCAACAAAGATATCCAGAAACTGCTGAAGCCCTCCAGCTCGGGAGAACTGCCGAAAGAGCCGCTTCATCATCCCACGGGTGAGGAAGAGGCAGTTATCCTGGGACACACCCCGGGGCTGCTGCATGTCACTGAGAGAAGACAGCCCCTGAGCAGTGTGTCATCCCTGGAGGTGCATTTTGACCTTCTAGACCTGACAGAGCTCACGGACATGTCCGACCAGGAGTTGGCTGAGGTGTTTGCTGATTCTGATGAAGAGAACCACAACGACTCACCTGCAAgtcaccaccaccaccccctgcCGCTACACCGAAGCGGCTACATGCGCTCTCCCTCCTGGACACGCTGCAGCAAGAACGAGCAGACGAGGGACAGAAAGCACCACAGCGACTCGGACACCACCGACCCGCATCGCAAACTGGAGAGGCCCAAACAGCCCtgagaacacacactgacactggaGCGGCCCGGACAGCCCTCAGAGGAACACACTCGACACCTctgaccgacacacacacggcCGAGCCACGGGGACGTCCAGACCTGTGACGCTGAGGACGCTAATATGAGCTCTCCATGCTTTATTTATATGAAATGTGTCACTGCAGAAGCTGTGGGACAAACATCTCTCTCCATATTCATATTCAGTCTGGTCTATTACTTCTCAAGGGCTTTCTGTAGACTGGGATCTGCAGCTGCGATGTTGGAAGGCCTGGTTGGATTTTATGAAATCTCATTCAGAAACTGCTCTGGAATGCAGTTCTATGATGTTCAGGCAGACAGAGACGTCAAGGAAAACATCAAGAACTGGAGCTAAAATGAAAAGAATGGAGTGTTTTTGAGAGACAAGCCAAAAACGAATCACTGTATAATCCATTGCCTTTATAAAGTAACACAACAAACTGCTATAAGGAGTGATTGTAAACACAGCCCAGAGGctggtgtagtgtagtggataacaacacTGCCTTCTCCACTgcaaactttaaaaaatcaaGGTTTAATTCTAAACTACACACTTTTCTAACTCTACATTCTTCTGCCTGTGTAACCTGATTCTTATAATCACTAACAAGGACAAACCCCATAGAGACAATAGGTGGGATAGGATAAGTATTTGAATCAgaattttacatattaaattaattatgtataaattgcatttaatatactTCTAATATTTAAGTCCTTCCATAGAATAACCATAAATCAACCATACACAAATCAGccatttccattattttacaataaaaaaaattgatgtgcTTTATTAAGACATATATTTCTTCATTCatgaaaaaagggaaataaaataattattttttcacagAAAGGAAAAGTGGTTGATGTATGGTTACTTGTTGGAAGGCTAATTAAATGGCATAATTCATAAATTAGAATTTAACAATTTTTATTAGGTGGTTAAATTTGCtgttgaaaataaaatacatttaaaaatttaacattttttagattttaaaacagCTATTTGAATGTCGGTCCTGAGAGAGTACTATGATTCATCTAATTCAACTTCAAGCATTCTGACAAAACTGACTTTGACTTTGCCTAAATTaatatttctgcattttagaGCAGAGGTTTGATTGTATAgatgtaacatttatttagatAGAAATGTAACTTGTcaaatgtataatgtatttttaacattgttaaaaacagcattaacaTCTCACAAgctcaaaacaacaaaaaaaaaacctctagtTTATGAATtatgcaatatttaaaaaaataagaaatgtcatgttaataatatacaaaatataaaattcagCCTCTAAAAAAGTCAACCTAAACAAAGTTTGGCACTTTTTAAGCTCCATAAAAACGTTTTACCTCCAAAATGGAGGAAATGGAGCAGAAAAACCTTTTCTAACTTTTCAATTgaaatatttaagtcattttggagcatttgtaTTAGTCCATTAATCATGATCTctagctttttctttttgtggtGACACAAACACGGACACATATTTCCATAAATTTAAGCACAAGTCTTATAAAACACTGTTACTTCTCCTT

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212022 lncRNA upstream 7800 6313952 ~ 6317024 (+) True G156402
TU212017 lncRNA upstream 15204 6309372 ~ 6309620 (+) True G156399
TU212015 lncRNA upstream 16263 6308233 ~ 6308561 (+) True G156397
TU212013 lncRNA upstream 17404 6306725 ~ 6307420 (+) True G156395
TU211931 lncRNA upstream 207235 6117145 ~ 6117589 (+) True G156340
TU212040 lncRNA downstream 20118 6383267 ~ 6384043 (+) True G156419
TU212058 lncRNA downstream 46472 6409621 ~ 6412224 (+) True G156431
TU212064 lncRNA downstream 64915 6428064 ~ 6428293 (+) True G156434
TU212065 lncRNA downstream 66874 6430023 ~ 6430626 (+) True G156435
TU212066 lncRNA downstream 69248 6432397 ~ 6432862 (+) True G156436
XM_007244016.3 mRNA upstream 19252 6301848 ~ 6305572 (+) True foxf1
XM_007243994.3 mRNA upstream 213818 6100753 ~ 6111006 (+) True irf8
XM_007243995.3 mRNA upstream 229156 6067215 ~ 6095668 (+) True LOC103030962
XM_007243996.3 mRNA upstream 259291 6063252 ~ 6065533 (+) True LOC103031281
XM_007244001.3 mRNA upstream 282321 5703122 ~ 6042503 (+) False gse1
XM_022679507.1 mRNA downstream 119670 6482819 ~ 6488287 (+) True gas8
XM_007244032.3 mRNA downstream 368021 6731170 ~ 6759468 (+) True LOC103042367
XM_007244034.3 mRNA downstream 445786 6808935 ~ 6817496 (+) True zdhhc7
XM_015604486.2 mRNA downstream 446018 6809167 ~ 6817496 (+) False zdhhc7
XM_007244039.3 mRNA downstream 460480 6823629 ~ 6828644 (+) True cog8
TU211750 other upstream 1167424 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 3569712 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 5055445 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 1009227 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 1024353 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 1237418 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 2206781 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3577680 9940829 ~ 9941805 (+) True G157383

Expression Profile