RNA id: XM_015604482.2


Basic Information

Item Value
RNA id XM_015604482.2
length 3803
RNA type mRNA
GC content 0.42
exon number 11
gene id washc1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7230927 ~ 7241982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATGTGACTAGTCGGTGCGGAAGTTTTGATAACAGAGCTCATTTCAGTGCTGTGTTTATAGGCGATGCGAGGATTTTGTCGCTTTAGCTGCTTTAACTGCGTTATAAATGGTCAGgatgaCTCAGAAGTACCACTTGGAGGGACAGGTGTATTCTGTCCCAGTGATCCAGCAGGACTTGAGGAGGGAAGAGGCTGTGCACCAGATCACTGATGCTCTGCAATACCTGGAAAATATTTCAACAGACATCTTCACCAGGGTGTCGCAGAGTGTGGAAAAGAATCGCACTTACCTCCAGGCCGTCACAGACCGTATCAAACTGGCTCAAGCACGAGTCCACAAGATCAAAGGAAGCAAAAAAGCCACCAAGGTATTTTCCAGTGCTAAGTACCCTGCTCCAGAGAAACTAGAGGACTACTCCTCCATTTTTACAGGTGCTGTTGATCCTGCATCTCAGAAACGACCTCGCTACAAAATTCAGGGCAAGCTCCGCCCCCTGGATGACAAGGCCTTGCAGGAGAAGCTAAAATATTTTCCAGTATTTGTGAACACTAAGAAGCGCTCTGAAGATGAAACGGAGGAGGGGTTGGGTAGCCTGCCCAGAAACATCAGCTCAGTCAGCTCCCTACTACTCTTCAACACTACAGAGAACCTGTATAAGAAGTATGTGTTCCTGGATCCTCTGGCCGGGGCCGTCACTAAAACTCACACCACGCTGGAGAcggagaaagaagaaaagccaTTTGATGCCCCTCTCTCCATCACCAAGAGAGAGCAACTAGAGAGACAGACTGCAGAGAATTACTTCTATGTGCCAGACCTGGGCCAGGTGCCAGAGATCGATGTGCCCTCTTATCTACCTGACCTGCCTGGCATTGCAGATGACCTCATGTACAGTGCTGACCTTGGTCCAGGGTTTGCTCCCTCTGGTCCTGCCAGTGCAACCATCCCTGAACTGCCCTCGTTCGGCACAGATCACGAAGAGCCCAATGGACCTGGCTCCCAGTTTAGACCAGAGGCTCCACCCCcacctccgcctcctcctccacctcctcctcctgagCCAACTCATGTTCCAGGTCCTCCTCCTGGAGCTCCTCCAGCTCCACCCCCTcctcccccgcctcctcctgTTATAGCAGATGGCGCAGGAGGTGGAGATGCTTCCAGTCAGGCCCAGCCCACAGGTGCAGTAAAAGGTGCTCCTACAGAAGTTGTACAGCCGTCAGATGGGCGAGCGAGCTTGCTGGAGTCTATACGTAACGCCGGGGGCATCGGCAAAGCCAAACTGCGGAACGTTAAAGAGCGTAAGAtggagaagaagaagcagaaggagCAAGAGCAAGTTGCTGTGACAGCCAGTGGTGGAGATTTTATGTCTGATCTCTTTAATAAACTGGCAATGCGTCGGAAAGGCATCTCAGGTAAAGTCCCTGGGGGCGGAGACGCCACAGAAGCACCGCCCAGTTCTGGTAGTGCATTTGCCAGGATGTCTGATGTGATCCCTCCACTACCATCACCACACCAGCCAACCACAGAAGACGATGACGACTGGGAGGCATAGTGAATACACATGGACCTGTCTGCTCTGTACAGGCTGAATTTAAACAGCTctgaatgtagttttttttatgaactgAAAACAGGGTTAAAGATTTGAAGGTTTCAGCACTTCCTGGAAGAATGTTCGACATCTCATCCTGAGGCACTGTTTCAGCTGCAGTGTGGCAGAGAGGTACAGAAAACCAGATTCAGGGGAAGATGAGGCTCTGTAAGGACAACAGACTGTCAAAACAAATCTGTTCAATGCTCATCACTTTCTTAATCTGACCTGATTTAGTTTGTTTTGTATCCATGTGtgattattttactaaaaacgTCAATAAATCAAGATCATGGACTGAATTCACAAAAGCCctcctaaaaaaaactttaacctATGAACTCTTAAGATAGACACTAAAAGAGTGACAGATTGTTCTTAAATATGTTCAAAAAATATCTTAGTCTAAATTTTCTTTAGGCACTCTTTGTTGCTTTCTTgtgtataataaaaaatgaagctGCATATGTGCTGCATTTTACAGCTTATCATAAAAACGttacacttttaatttttcacTATTCAGTTATAATAAATCTGTGCAAAAAACTGGAGGGATAAACACAAATCAAGGGCTAAAACTGACACTAGAGGAAACAGGAACAACAGCACTTTGGAATGGAAAATATTGTCAACATTGACAAAATCTTAGAAATGGCAACtttattccaagtaattttgaagcatatctattggtctgtttatcATGAAATTGTGTCGTAATGTAACGAACAGCTAAGAAATTCACACTATgtttaaagtaaaagaaaaaagcaaagatAGAGATACAAGGATTTTTCTTGACATTAAGAAATGGTGGTGTCAGACATTGTTTTCCTTTATGTAGAAAGTACTTCAGTATCAGTAAAAACAATTTATTGCATTTGCTAATTCTTCATAAGAAAAAGTTTCTTCTTAAAACCCACTTTTGCAGTTTTCACAAAAATTCAGAAAATCACCAAAGTTTTCTAACTTGGAAATATGATGAGTTTACAAGGACAGTGGGCTTCATCATTATGAGAGGAGAGCAGTGAACAACTAAGGTTTAAACTTATAATTAATTCATGCATATCATGAATCAGACACACTTTTTCTGGGGCCCTTTCtcaaaaacagtttaaagaaATTTCTAAGGAAGTTTTTGGTAATACTTTTAATTCTATTAAATTATACATGAATTCTGTAAGTCATCTATTTAAACTGATGATAATTGGCTTTTTCATATCTTACACTCTAAGACTTAGTGTGAGATGACCCTAAAGTTGCTAGAcatagtttttattttccatttcaaatataaaaatatatcctAAAAATGAGTGTATGAAGTTAAGAGAAAAAGCACATCTATGAAcatctattctaatcatatcaCACTTGTGAATCCAGCCTTGGGATTTAAACAGTATCAGTATGGAATATGTGGCTGCCTGTATGAACCCTCAGACAGAGAAAAGCCAGGACCCTCAGCctcctttaaaaaaactgcaCAACTTGCATCTCCGTCAGTGTCCATCAACTGGGATTTATGAGTTTTAAGTTCCTTACACCCTGAGTGATAAATAGCCTGACTAAAGCTTTGTACATGTAAATGTGCTTCAACTGATGCAGCCCTAAAAGCTTTAGCCATGGGAGAATAATGAGATGGATATTGACAAGTGAATGAGAACGTCCAACATATGGATGAGCCTGGAAACAGATGCTGTATTTTATGTAAAGTGCCAATCAGAAAGCAGAAAGAATATCTGATTTACATATTGTTACTGTCAAAGTCTAAAGTTTTTGCGTCATTAGATGTCAGTGACAGCTGCCTTTTACACTGTGTGGACAATTGTGTTAAAAGAACCAACTGAATTTATGAAGTTAAGAATGTTTGGGACAGCAACAataaaaagcagcataaaaacaatatttctgtCATAAAATCTCAGTAAGCAGGAAATCCAAGCTTCCAGGCTGAGGAGCACTTGAACGTGACGTTtgtgtaattgctttttttacCCATTGGTTATTTGAATGGATTGTTCAGCCGTATTTTGATAAGTAGCGCTGTTTTTTGGAAAACTGCCACACATCATTTAGACACATTTTTATGTGCGATTAAGCATAAATGAGGTCCTTGTTCTGCATGTCTAAAGCACTAACTTTTTGTGTACTGCAGCTGCTCTgagatatacaaataaataaatgctgattTGTTA

Function

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0055038 recycling endosome membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0071203 WASH complex cellular_component
GO:0043014 alpha-tubulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K18461 WASH1; WAS protein family homolog 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212379 lncRNA upstream 59302 7168208 ~ 7171625 (+) False ptprq
TU212321 lncRNA upstream 200219 7026598 ~ 7030708 (+) True G156623
TU212237 lncRNA upstream 361363 6868260 ~ 6869564 (+) True G156562
TU212190 lncRNA upstream 456195 6768942 ~ 6774732 (+) True G156523
TU212165 lncRNA upstream 559733 6670921 ~ 6671194 (+) True G156499
TU212428 lncRNA downstream 3782 7245764 ~ 7248460 (+) True G156697
TU212484 lncRNA downstream 110015 7351997 ~ 7412688 (+) True G156731
XR_002651235.1 lncRNA downstream 147124 7389106 ~ 7398357 (+) False LOC111194759
XR_002651234.1 lncRNA downstream 147124 7389106 ~ 7398357 (+) False LOC111194759
XR_002651231.1 lncRNA downstream 147124 7389106 ~ 7398357 (+) False LOC111194759
XM_022679969.1 mRNA upstream 60045 7093507 ~ 7170882 (+) True ptprq
XM_022679517.1 mRNA upstream 143344 7031903 ~ 7087583 (+) True LOC103039382
XM_007244041.3 mRNA upstream 204982 7017514 ~ 7025945 (+) True LOC103045026
XM_022679515.1 mRNA upstream 246790 6947453 ~ 6984137 (+) True LOC103044721
XM_022679513.1 mRNA upstream 300525 6871861 ~ 6930402 (+) False LOC103038759
XM_022679521.1 mRNA downstream 21881 7263863 ~ 7271911 (+) True fkbp4
XM_007244043.3 mRNA downstream 21883 7263865 ~ 7271911 (+) False fkbp4
XM_022679522.1 mRNA downstream 32971 7274953 ~ 7315555 (+) True LOC103040627
XM_007244053.3 mRNA downstream 82518 7324500 ~ 7358192 (+) True c2cd5
XM_007244056.3 mRNA downstream 82518 7324500 ~ 7358192 (+) False c2cd5
TU211750 other upstream 2073527 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 4475815 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 5961548 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 130394 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 145520 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 358585 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 1327948 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2698847 9940829 ~ 9941805 (+) True G157383

Expression Profile