RNA id: XM_015606150.2


Basic Information

Item Value
RNA id XM_015606150.2
length 1447
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC103043515
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14059803 ~ 14075538 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTAAATTTAGTtaacttaaaatgtaataatttctGTGAGGCTTTTGAAGATGATTTATCTGAACATAATTCATtagaattattttgttttatatttattttgttttgaaagATGCAAACCTTTACAATTTACTTCAGGGCAGGTGCAGGCATGAGCAAGGCGAGGTTGAGCCGGGAAAGGCGAAGCACTCAGCCCGGCTTTGCCAGAGTGACGCGCAGCTCCATCAGCTCACAGGACTCAGTCACACCTCAGCAAGGAAGACTCACAGACTCTGTTCTACTCAGTGACCTCAGCCTCATGAGAGTCAGTGAACAACAGGCCTCACTGGCACGGAAAGGAAAGCTGTCAAAGGTGGGCAGTGATAACAGTGAGAGCTCATCAGGGAACACAAAGCATGGTCTCTCCGGCTCCTCCAGTTCTTCAGTACGAGCCTCGGGCCGCTCAGCCCCTCGGGGGGCTCTGGAGACTGTGGGCCGGCTGATGAAGCTGGGGCGCCTGCGCAATGTTGTAGTGGTGGCTGGGGCTGGAATCAGCACAGCCAGTGGCATCCCAGACTTTAGGACACCAGGAACAGGCCTGTATGCAAACCTGGAAAAATACAACGTGCCCTACCCCGAAGCTGTATTTAACATTGACTACTTCTCTGATGACCCTCGTCCTTTCTTCTCATTGGCCAAGGAGCTGTATCCTGGCCGCCATCGTCCCAATTACATCCATTACTTTATCCGTATGCTGCATCAGAAAGGTCTGCTGCTTCGCATGTACACACAGAACATCGACGGCCTGGAGAAAAtgtgtggtATCCCAGATGATAAGCTGGTGGAAGCTCATGGAAGTTTTGCGACAGCCTCCTGTCACCTGTGCTATACACCGTTTCCTTCTGAAGAAGCCAAGgAGGCCATCATGAGTGACAACATCCCTACATGCTCATTTTGTTCAGCCACAGTCAAACcgagtgttgtgttttttggagAAGATCTACCTGAAACATACTTTCAGCATGCCCAGGATTTCCCTAAAGCAGATCTGCTCATAATCATGGGAACATCTTTACAGATTGAGCCTTTTGCCAGCTTGGTGAACACGGTTAAATCCACGGTGCCCCGGCTGCTGCTGAACCGGCACGCAGTGGGCCCATTTGAGCGTAAGCCACTGAGGAGAAGAGACTACTTGGAGCTGGGAGATCTGGTGCACTCAGTCAGAAAGCTGGCAGAGATCTTGGGCTGGCACACTGAAATTCAGGACCTAATGAACAGCCATGAGAACAGGACGCTCCCCATGCTGATCAGCAGTTCTCCAACAAGCAGTGGAGCTATGGATCCATCCTGCAGTAGCGGTGAGGAGAGCGACTTCTCAGAGGTCGACAGCAGAAGCACAGAGTCGTAAATACTAAACAACCATAGACTTCTACAGGCTGTATGGAAATTACACATGCCCATTCTCAA

Function

GO:

id name namespace
GO:0051287 NAD binding molecular_function
GO:0043167 ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214251 lncRNA upstream 72645 13983946 ~ 13987158 (+) True G158045
TU214245 lncRNA upstream 79782 13974731 ~ 13980021 (+) False LOC103042073
TU214221 lncRNA upstream 210504 13848642 ~ 13849299 (+) True G158023
XR_001518691.2 lncRNA upstream 317303 13735253 ~ 13742500 (+) False LOC107197649
TU214123 lncRNA upstream 714339 13299376 ~ 13345464 (+) True G157943
TU214242 lncRNA downstream 12928 14088466 ~ 14092532 (+) True G158038
TU214277 lncRNA downstream 40781 14116319 ~ 14116843 (+) True G158068
TU214298 lncRNA downstream 73948 14149486 ~ 14150489 (+) True G158085
TU214299 lncRNA downstream 75880 14151418 ~ 14157033 (+) True G158086
TU214309 lncRNA downstream 93421 14168959 ~ 14190042 (+) True G158093
XM_007250534.3 mRNA upstream 37379 14008015 ~ 14022424 (+) True LOC103042895
XM_007250532.3 mRNA upstream 79778 13973827 ~ 13980025 (+) False LOC103042073
XM_015606139.2 mRNA upstream 79965 13973821 ~ 13979838 (+) True LOC103042073
XM_022679638.1 mRNA upstream 87479 13961055 ~ 13972324 (+) True cry1
XM_007250523.3 mRNA upstream 384423 13666685 ~ 13675380 (+) True uri1
XM_007250551.3 mRNA downstream 154942 14230480 ~ 14247822 (+) True LOC103047487
XM_007250549.3 mRNA downstream 176858 14252396 ~ 14277266 (+) False nr1h4
XM_015606138.2 mRNA downstream 176859 14252397 ~ 14277266 (+) True nr1h4
XM_007250550.3 mRNA downstream 182214 14257752 ~ 14277266 (+) False nr1h4
XM_007250548.2 mRNA downstream 205361 14280899 ~ 14301400 (+) True LOC103046676
TU214177 other upstream 323701 13733945 ~ 13736102 (+) True LOC107197649
TU214078 other upstream 1318804 12735632 ~ 12740999 (+) False hsbp1
TU213920 other upstream 1693033 12362451 ~ 12366770 (+) False LOC103031933
TU213377 other upstream 4117998 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 5488926 8569930 ~ 8570877 (+) True G157055
TU214707 other downstream 974684 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 1052830 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other downstream 1052830 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other downstream 1058409 15133947 ~ 15136198 (+) False LOC111194769
TU215237 other downstream 2303721 16379259 ~ 16379823 (+) True G158779

Expression Profile