RNA id: XM_022679413.1


Basic Information

Item Value
RNA id XM_022679413.1
length 4086
RNA type mRNA
GC content 0.60
exon number 7
gene id LOC111194719
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36391175 ~ 36439808 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCCTCTGGCTCCACATTATTCCTACAACCTTACAGCCATGCCAAatattgagctgACGGCTCAACCCCGCCTTACCCCCTACGACGGCAGCGCTGACTGGACAGCCTTCAAAGCTCAGCTGGAGATCGTGGCGGGCGGTGCGGGCTGGACAGATGCCGAGACGGCAGCCAACCTCTGCCTGGCGCTTCGGGGCGACGCGCTGAGGGTACTGATCGAACTCCCCGCCGAGTGCCGCTGCGAGCTGCCTGAACTGACGCGGGCGCTGAGAACACGTTTCAGCCGCCAACCGTCGGAGGCGGCCGCCAAAATGCTTGTGGCGGACAGACGCCGACAGCAGGGAGAGACACTGGGCGTGCTGGCATCGGAGATGGCCCTGCTAACCCGCCAAGCTTACCCAACGTTTCCGCGATCGGCCCAGAGGAGGCTCGCTTTGGATCACTTTCTGCGCGCCCTCGAGCCGAGCGAGCTGCGCAAACACGTGAGGCTGGCCGACCCGCAGACCCTGGAGTCCgcggtggaggtggtggagctgTCTGAACTCATCCTCTCAAGCCATCCTTTACCGTGGGGGCCGTCGCCGGTTGCCCGTGATTCGCAGAGGTGGGGTCGGAGCCGGTCTGATGCCCAACTGGAGTGCTGGCGCTGCggggggcgtggccacaagCGAGCGCACTGCAGAAGGCCGGAAAACGGAGCCAGGACCACCCACGGCTATTTCCTGAAATGCACATTGAATGGAGTGacggtgaacgcgctggtggacACGGGCTCGTCAGTCTCACTGATACGGCCCGAGCTAGCGACGGAGGTAGCGGCCGAGTTTGTGACTGACAACAGCCAGCGCATCGCTCTCTCTTCAGTCACCGGGGATCCTATAGGTCTCCTAGGATTAATGGAGTTGACGATTGATGTCGGCAAGGGGCCCTTTCAACAACAGTTCTGGGTAGGACGCATCAACGacccgtgcattctgggcaaggacCTAGCCGTCGGAGCTATCATTGACTGTGCACGGGGCTCGGTGCTGGTGACTGGACTCCCCGTAGAGATACGCGACGAATCCGATAGAGGAGATGCTGGAGCGCAGTTGTGTGGGTTTATCTGGTCCCCAACAACAAAACTTCGTTTGCGCGAACTGATCGGCCGTTTTCGCACAAGTTTCGCTGTGTCTGAGCGCGAGTGTACTAAAACTAGCCTTGCGGTTCATTCGATAAACACGGGTGACGCCCAGCCCATCAGGCTGTGGCCGCACCGTCTGGCGTTAGCAAAGCGCGTAGCGGCGGAGCAGTTATTCCGCAAGATGGCGAGTACGGGCATTATTGAGCCTTCGAGCAGCCCGTGGTCAGCCCCGGTGGTCCTTGCAAAAAAGAAGGATGGAAATTGGCACTTTTGCATGGATTATCGGCGACTTAACGCTGTCACGAAGCTTGACTCCTACCCGCTCCCCAGGATCGACGATATGCTGGACCAGCTGTCTGGctcagcctggttcagctcgTTAGACCTGAGGAGCAGATATTGGCAGGTGCCCCTCGCGGCGGGGGATAGGGAGAAAAACGCTTTCTCGCTCGGCTCAGCCCTATGGCATTTCACGGTGCTTCCGTTCGGATTGTGTAACTCGCCGGCTACTTTTGAGCGTCTTATGGAGCGTGTTTTATGCGGGGTTCCGCGGTCGTGCTGCCtcgtttatttggatgatgtcTTGGCGCACGGAACCGACTTCGACTCCGCACTCTCTCACCTTGAAATGGTGCTCGGCGCGATTCAGGCGGCTAACCTGAAGCTCAATCCGGCAAAGTGTAATCTGCTAAGGCAGCGCGTGAGCTTCCTGGGCCACGTAGTGAGCGGTGCTGGAGTGGAAACCGATCCCAAAAAGACGGAGGCGGTCCGTGACTGGCCCACACCGCGAGACGCAAAAATGGTTCGCAGCTTCGTGGGGCTCGCCTCGTATTACAGGCGGTTTATTAGGGGGTTCGCGGACGTGGCAGCGCCGCTTCATGCTCTGACTAAGCCTAGTGTGAAATTCCGCTGGTCTGACGAGGCGGAGCGGGCATTCGAGGAGTTAAAAGCCGCCTGTGCCAAAGCTCCGATTCTAGCGTATCCGAAGGTGTCTGAgagtttcattgtggatacCGATGCGAGCGACCACGGCCTCGGAGCAGTCCTGTCGCAGGTTCAGGACGGCTCCGAGCGCGTAGTAGCGTACTATAGCCGCTGCCTGGACAAGGCGGAGCGCAACTATTGCGTAACGCGCCGGGAACTACTCGCGGTGGTCGAAAGCCTTAAACATTTCCAAGCGTATGTGTATGGGGTGCCCTTTCTGCTGCGCACTGACCACGCCTCGCTACAGTGGCTCATGCGTTTCCGCGAGCCCGAGGGCCAACTCGCGCGCTGGTTatctagactccaggagtttcATTTTGAGGTTGTGCACCGCCCGGGCCGTGGCCACAGTAACGCTGATGCTTTGTCGCGCCGGCCGTGTGTGGCCGCCGACTGCAAACATTGTGCTcgtgctgaggagaaatctgctgAGACCGCACGCTGCGCTGCAATCTCCAGGGATGTTACTGGCGCTGTCGGGGTGACTCAGGTGTCCGTAGAGCAGCTTCGCGATGCGCAACGGGCGTATCGCGAATTATCGTGGGCAGTACACGAGCTCAGTGCGAACGTCACACCGTCGTGGGGGGAGGTGGTGCCACTGGGCCcgattgctaaggcgttgcgctccaactgggctagttttagtttgtccGATGGCGTGCTGTGCCATACCTGGGAGGATCCGGCGAACGGGCGGCGCGTTTTTCAGGTGGTGGTACCGCGGGCGCTTAGGGGATCGGTCCTACGGGGAGTTCATGGGTCACCTGGGGCTGGGCACTTTGGTGTCACCAAGACTCTGAAGCGCCTGAGCCAACGCTTCTATTGGCCTGGGTGTAGAACCGACGTGGAACTCttcgtgcactgctgtgacgtgTGCGCTGCCAAGAAGGGCCCCTCGAGGGCGCCCCGCGCCCCACTTCACCCTTACCAGTGCGGCAGCCCGATGGAGCGGGTGGCCGTGGACGTGCTGGGCCCCTTTCCGGTGACAGACTCTGGAAATCGCTTTGTTCTGGTGGCGATGGACTATTTCACGAAGTGGCCAGAGGCCTACACGGTGCCGGACCAAGGGGCGGTCACTACTGCGGATGTCCTGGTGCGGGAGTTCTTTTGCAGATTCGGGGTTCTGGAAGAACTGCACAGTGACCAGGGGAGAAATTTCGAGTcggaggtcatggcggaggtctgccgcaTCCTGGGAATCCATAAGACCAGGACGACGCCCCTTCATCCACAGAGTGACAGACTGGTGGAACGTTTTAACCGCACGCTGGTGgcgcagttggccatggtgtcggacaagaaccagcgtgactgggacaggCACCTGCCGGTAGTGCTGCTGGCTTGTTGCTCCGCTGTGCAGGAGACGACGGGATTCACGCCGGCTCTGCTTATGTTCGGGCGCGAACTGAGGACACCAGTCTCCCTGGCTTTTGGGGCGCCTCCTGACAGGGGCGGGTACGCTTCGGACATGCCCACTTTTGTCTCGGACCTTATGTCTTCGCTGGAATTAGCACACCATCTAGCGCGCTCCAACCAGTCTGCTGCCGGACAGAAGCAGAAGCGTGCGTACGACACACGCTGCTTTGGGGACCCGTTGGCGGTGGGGGCGAGGGTTTGGCTATATGACCCTCAGCGGAAGAAGGGACTGTGCCCGAAGCTCCAGTCGGCCTGGGTGGGTCCgtgcttggtgctgtccaggctgGGGGAGGTGGTGTATAAGATCCGGTGGGGCAGACGCACTATGATTGTGCACCGTGATAGGCTGGCCCCCTATAGGCCGAGACTGTCGGACACTGTGGACGGTGGTGCCCTCcagCTGCAGACCTGCCAAAGCCTGTCCATCGACCCGCCCGTGCTGCCATCGCCGTCACGACGGGCCTCCTGTCGCCACGGCGACGGACAGACGACCCCGCCCTGCCCCTTGCCATCTCTCTGGTTACAGCAACCCCACGCCTGCCACGGGATCAAAAGGTCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220668 lncRNA upstream 2783 36388021 ~ 36388392 (+) True G162904
TU220657 lncRNA upstream 117813 36273124 ~ 36273362 (+) True G162893
TU220636 lncRNA upstream 157087 36233752 ~ 36234088 (+) True G162883
TU220619 lncRNA upstream 161320 36228725 ~ 36229855 (+) True G162870
XR_454969.3 lncRNA upstream 205516 36183719 ~ 36185659 (+) True LOC103046468
TU220681 lncRNA downstream 47960 36487768 ~ 36487983 (+) True G162917
TU220691 lncRNA downstream 104662 36544470 ~ 36544753 (+) True G162927
TU220694 lncRNA downstream 122781 36562589 ~ 36562903 (+) True G162930
TU220705 lncRNA downstream 230179 36669987 ~ 36671428 (+) True G162941
TU220706 lncRNA downstream 230565 36670373 ~ 36671942 (+) True G162942
XM_007251869.3 mRNA upstream 168140 36188768 ~ 36223035 (+) True rab27a
XM_022679908.1 mRNA upstream 221430 36149295 ~ 36169745 (+) True ccpg1
XM_022679906.1 mRNA upstream 221430 36149295 ~ 36169745 (+) False ccpg1
XM_022679907.1 mRNA upstream 221430 36149296 ~ 36169745 (+) False ccpg1
XM_007251867.3 mRNA upstream 243073 36142088 ~ 36148102 (+) True LOC103046170
XM_022679911.1 mRNA downstream 530902 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA downstream 530903 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA downstream 530903 36970711 ~ 37261985 (+) False LOC103026877
XM_022679913.1 mRNA downstream 847359 37287167 ~ 37352779 (+) True LOC103046025
XM_007239647.3 mRNA downstream 947686 37387494 ~ 37399839 (+) True LOC103045417
TU219593 other upstream 3671900 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 4096146 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 4242985 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 5512863 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 314377 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 970184 37409992 ~ 37411969 (+) True G163105

Expression Profile