RNA id: XM_022679415.1



Basic Information


Item Value
RNA id XM_022679415.1
length 1019
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC111194723
representative True

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 38944402 ~ 38945904 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ATAAGGTGAAGGCGTTTTTCGTTTAATCCCGTTCCCATGTATGGGGCACTAACTAATTCTTACTTCATTAAAATAACCTAATGGTTTAAAACGCGATAGTAAAAGTTCTCCATATATAATCCagcagttattttttatttggtgttTTTAATTGGGTATAGTTCCTTTCTCGCGCAGTCGTCTTTTCTTAACGAGTGATACGGATTTGCGGACTAATCGTCATGTGTTTCCCGCTAGACCAATCAGGCGGCTGCTTTTAGGAGCCGGAATCCAAAATGTCTGCGCCCGTGTTGTCAACAACGAGTAGTGAAGACGAAGACTGTCCGACAATAATACCTGCAAACgtgcataaaaaatgtttaaaacaatgttaTATGCATCTTACGTCCTTAAAGAAAGAAGAGGCAGAGGATTTTACACGCACGCGGTGGGATACTTTCAGAAACAGCGTTAAACGATGGCTTGGCTTGAAGGGGGAGAGCCAGAGGATTGCAGAAACATATAAACATTGTATTGAAATTGAGTTTGAGAATATTCCTAAAGATGCTGGGTTTCACCCCACTTGCTACCGGCGTTTTATAGACAAAAAACGTTTAAATGCGGCAGAGAAACAAGTCACACAGTGTCCTGAAGCTCAGGATACGGACGGAGGCGAGTCATCCTCTGTTGCTTCATCATGTTATACCCCAACAAAGAAACTGAGGTCCAGGACGGGTTTGCCAGTCCCTTGTACTGGTCCCGTGCTTCCTGCGTtatgcataatatgcaaaaaaagGGACAAGTATCTAACTGTTGGAGGCAAACGCCAGAAGGACCATCTGTCACAGGCAGAAACGTTTTCAGCAGgcCAGTTGCTAAAAGCTGCCAGGATGAAGGAAGACACTAGCATTCTTGTACATATTCAAGATAAAGACTGTGTGTCCCTGGAGGTGCGATACCACAAGTCCTGCTACAGACAGTACACCAGATTCTTGTCAAAGACCACCCCTACAATTACTGGTGCACCAGAAGAACGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221298 lncRNA upstream 24714 38917939 ~ 38919688 (+) True G163386
TU221294 lncRNA upstream 63474 38880389 ~ 38880928 (+) True G163382
TU221291 lncRNA upstream 70547 38873408 ~ 38873855 (+) True G163379
TU221242 lncRNA upstream 141214 38802968 ~ 38803188 (+) True G163349
TU221186 lncRNA upstream 199466 38742795 ~ 38744936 (+) True G163297
TU221338 lncRNA downstream 90966 39036870 ~ 39042425 (+) True G163420
TU221341 lncRNA downstream 107490 39053394 ~ 39091133 (+) True G163421
TU221366 lncRNA downstream 159901 39105805 ~ 39106049 (+) True G163443
TU221367 lncRNA downstream 161883 39107787 ~ 39129586 (+) True G163444
TU221395 lncRNA downstream 230296 39176200 ~ 39178877 (+) True G163465
XM_007242261.3 mRNA upstream 998153 37944201 ~ 37946249 (+) True LOC103021700
XM_022679921.1 mRNA upstream 1108502 37589985 ~ 37835900 (+) True LOC111194820
XM_022679917.1 mRNA upstream 1437205 37460072 ~ 37507197 (+) False parp6
XM_022679931.1 mRNA downstream 272 38946176 ~ 38951124 (+) True LOC111194822
XM_022679428.1 mRNA downstream 146575 39092479 ~ 39094807 (+) True LOC111194738
XM_007241930.3 mRNA downstream 227420 39173324 ~ 39175138 (+) True LOC103046335
XM_022679937.1 mRNA downstream 239318 39185222 ~ 39191405 (+) True tspan3
XM_022679940.1 mRNA downstream 326032 39271936 ~ 39337878 (+) True pik3c2a
TU220936 other upstream 1532433 37409992 ~ 37411969 (+) True G163105
TU220729 other upstream 2189715 36754185 ~ 36754687 (+) True G162964
TU219593 other upstream 6225127 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 6649373 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 6796212 32068862 ~ 32148190 (+) True G162017

Expression Profile