RNA id: XM_022679438.1


Basic Information

Item Value
RNA id XM_022679438.1
length 8237
RNA type mRNA
GC content 0.50
exon number 41
gene id LOC103033531
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 421528 ~ 537878 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCCCCCAGTTTGAGAGCATCGCTGACTGGGCTCCTCCTTCACCCCACACTGCTGTAACAGCCTGCAGTGATGAGATCCGCACTCTGGAGTTTCAGGCTGATCCATCAGGTTCTGCTCTGAAGCTGCACTGAGCTCCAGCCATCTTCCACCATGCTCTGCAGGACCCTGACTCTGAGGGCAGCTGGCTGCTTATCTGTGGTTCTGCTGGTTCTGGCTCTTTCTGAAGctgaaggaggagaggagctgCAGCAGGACAGGTGGAAGGTCCAGAGGAGAAACAGGACCAGAATAAACTGGACCAGAATACAGATAGATGTAAATGGGCCAAATGTGTGCGATGCTAAATGCTGCCCTGGATGGACAGTTCAGCTGAAGACAAAGCAGTGCACTAAACcgAGGTGTCTCCCTCGGTGTCATAACAGAGCAGTGTGCCGGCAGCCCAATATCTGTCAGTGTCGTCCAGGTTTCCACGGTGATCGCTGTGAGATCTCCAGCATCACTGCAGCCCCCAGCGTGTGGCTTTGGAAGCAGCCTAGCTGGACTAGTGCTCCCCCGGCTACTGTAACATCCCCCGTTACTACAGTAACACCTGTAACATCACCTGTTACTACAGTTACTACCAATACACCTGATACTACTGTTAATACTGTCACACCTGTTACTGCTGTCACTCCTCTGATCATCACTGAGGGCCTTTGGAGCAGCTTAAACACCTCAGCGTCTGATCCAAAGAAGAAATACTCATTACACTGGCAGTCTCACAGtcTGAAGGAGGCCCAGGCGGTGCTGCTAAAGAAAGCTCTGGCCCGGGGAGTTGGAGGCAGTAAAATCACCAGTGTTCTGCTGAAACACATCGAGACTGAGAGGAACAGACTGCAGTCCACTCCCAACACCGCCCACACCTCTCCACAGCCCAGCACCAAGTCCTTCCACACCCAGCATGGCCAgtacacactcatatacacccCAGCTGCTGCTCAGACGGCCAGCAGTCAGACGCCCAACGGTCAGCGGACGTTTGGACTCCTCGGAAGCTCAGAGCGGATCAAAGTGCTCTTCACTCCCACCATCTGCAGGCTGCGATGCACCCAGAACCGCTGCACCAACTACTGCGAGCGCGGGAACATCACCACCGTGTACAACagcgaacagcagggggcacaGGGGGCACCATCACCTGGATTCAGACTGTtcttGTGTCCGATGCTGTGTAAGAATGGAGGAGTGTGTATTCAGAAGGACCGGTGCCTCTGTCCCCCGAACTTCACCGGAAAGTTCTGCCACATTCCTGTCTCCTCCGCTGCCTCTACCAATGAAATCGAGAAGCCAATCTCTAGCTCCTCAGTTGTGACCAATCAGGGACTGACAGAGTCGGAGTACATCCTGCCTTTACAGAGTCCACAGCTACAAGCTAGAGGTTCCCCAATGGTGAAGGTGCGAGTGCAGCATCCTCCTGAGGCCAGTGTGAAGATCCACCAGGTGCTGAAGGTGGGTTCCGGCCCCACTGTGCACGAGCGCTCGGAGACGGTCACCTGGTCCGCCGGACTCTCCGGATCCCGAAGCGGCATCATTCTCCCAGGGGAAAGAGCAgaggccccgccccctcgcgCTCAGGCCACATCTTTCAGAGGCCAGGCTCCACCCCCTCGCATCCAGGCCCAGACCATCCGAGGGGATTTCACCTATACAGAGACATCCGGCTTCAAATACTGCTTCAGAGAGGTTCGCAACGGACAGTGCAGTTCCCCAATGCCGGGTCTGCGGAGTCAGGAGACGTGCTGTAGGGGGGACGGTCTGGCCTGGGGAATTAATGAATGCACACTGTGTCCACCTTCATCAGGAAGTAGAGGACGGGGTGAGGGACACTGTCCAAAAGGTTTTGAGAGGGTCAACGGCACGCAGTGTGTGGATGTAAACGAGTGTGAGCAGCCGGGTTTCTGTCAGAACGGGAACTGTGTGAACACCCGCGGGAGCTACAGCTGCGTGTGCAGGCAGGGTTTCCTACTGGACGCCTCACACGGCCTCTGTATCTCCCAGAAGGTGATTTCGTCGGAGAAGGATCAGTGTTTCCGGATCTTAAACCAGGGCGTCTGCTCTCTGCACATCCTGAGGAACATCACCAAGCagatctgctgctgcagccgcGTGGGGAAAGCCTGGGGACGCAAGTGCGAGGCCTGTCCATTCTTTGGCTCCGCTGAGTTTAAGGAGATCTGTCCTGCTGGTGCTGGCTATCATTACTCACCCAACACGCTGAAGATTACCCAGAGGGTGGCTGAAATAAATGACACCATTGGTCCACAACTGGTCTCTGAGAGCAGACCCCAACAGCCTGAAGCCCccagacacaccacacaccctcAACCGCCAACACACGGCCGGACCGCCAGCGGCCAGTATGACCCAAGGCAGCCAATCACCTCCGAAATCTATATCGTCCAAGGCAGACACGGCCAGACTCAGGACAGACCACCAGCCACCAGCCAGCCCACCAGAGCACAGCCACCTGTAATCAGGACACAGACAGGTAGACCGTCTattaacagacagacagttcgACCCCTCCCAGTTCCAGCTACGCCCCGCCCCTCTCTGCCCAGGCCAGacactcGTGTGTGTGATGCAAGGCCGCAGGTTTGTGGACCGGGTCGATGTGTGGATGTACCTGGAGGGAGACACACGTGTATATGCAATCCTGGATTTATCCTCAACGCTCAAGCTGGACACTGCCAAGATaaaaatgagtgtgtgttgacTCCAAGGCCATGTTTGGGGGGTCAGTGTGAGAACACTGTGGGCAGCTACCGCTGTGTGTGTCCACCAGGGTACCAGAGCAACAGCCAGCAGAACCAGTGCTCAGATATTGACGAGTGCCGTCAGGTACCTAACCCCTGCACTAACGGCCGCTGTGAGAACACACTCGGCAGTTTCAGGTGCGTGTGCAGGACTGGATACAAGCTACAGGacaacacctgcacagATATCGATGAGTGTGATGACCCTCTCCGCTGTCCTGGTCAGGAGTGTGTGAACTCTCAGGGTTCCTACAAGTGTGTGTCCTGCAGACCTGGCTTTGGCCTCCTCAATGGACAGTGCTCAGATATCGACGAGTGCAGGCAGAATCCTTCGCCCTGCTCTAACGGCCGCTGTGAGAACACACCTGGCAGCTACAGGTGTGCGTGTCAGGTGGGATACAGGACACAGGgcaacacctgcacagATGTGAATGAGTGTGAGGATCCTCTGCAGTGTCTGGGTCAGGAGTGTGTGAACACTCAGGGATCATACAGGTGTATGTCCTGCAGAACTGGCTTTGCGCTCGTCAGTGGTCGATGTTCAGATATCGACGAGTGCCGTCAGGTTCCTGTGCCCTGCTCTAACGGCCGCTGTGAGAACACACTGGGCAGCTACAGGTGTGTGTGCAGACCTGGCTACAGACTCCAGGgcaacacctgcacagatgtTAATGAATGTGAGGACTCTCGGCTGTGTCCTGGTCAGGAGTGTGTGAACACACAAGGTTCGTACAGGTGCTCATCATGCAGATCTGGATACACGTTTCGGAACGGACAGTGTGCAGaTGTGGATGAGTGTGTTCGTAGTCCTTCGCTCTGCTCTACTGGCCGCTGTGAGAACACACAGGGCAGCTACAGGTGTGTGTGCAGGCCTGGATTCAGACCGGAGGATAACACCTGCAGAGatgtgGATGAGTGTGAGAATGAGATTCAGTGTCCCGGGCAGCAGTGTGTGAACTCCATTGGTTCTTTCAACTGTGTGTCCTGCAGGCCGGGCTTTGAGATCATAAATGGCCAGTGCAAagacATTGATGAATGTGAGGACCCTCTACAGTGTCCGGGTCAGCAGTGTGTGAACTCCTTGGGTTCTTATGCGTGTGTGCGATGCAGAGGTGGACACAGCATGCAGAACGGGCAGTGTGCAGATATAGACGAGTGTGCGAGCCCTCAGACCTGTGGGccgcagagtgtgtgtgtgaacactgACGGCTCGTACAGATGTGAGTGTTCAGCAGGTTATCGTGCTGCAGGACTGGGACGACAGTGCAGAGATATTAACGAGTGTTTGGAGGGAGATTTCTGCTTCCCTAAAGGAGAGTGTGTGAACATGGACGGCTcctacatgtgtgtgtgtgcacagggCTACCAGACCGGCATCAACCGGACCTCCTGCCAGGATGTGGACGAGTGTACCCGTGAGGGGGTTTGTCAGGATGGGCATTGTGCCAACACTGATGGCTCATTTCTGTGCCACTGCAAGACTGGCTTTACATCCAACCCTGAAAAAACAGCCTGCCTGGatgtGGATGAGTGTGTGGACTCTGAAGGTGCTGTGTGTGGATCACTGCGCTGTGAGAACACCATTGGGTCCTTCCAGTGCCTTGTCTCCTGCCAACCCGGATACAGCATCACTGCTACAGGAGAGTGTGTGGatatTAACGAATGTGCTAATGAGACGGTGTGTGGAGAACAGTCCTACTGTCAGAACCTGATTGGGACGTATCAGTGTATCTGTGATCAGGGCTATGAGTCTGTAGGAGATGGACGATCCTGCATGGacaTTAATGAGTGTGAGACGATGGTGGGAGTGTGTGGTGCAGCACGCTGCTGGAATGTGGAGGGCTCGTTTACGTGTGAATGTGACAGTCAACAGGAGGAATTCAACCCTCTCACTCTGCAGTGTGTGAAGAAAGCTGCTCTaggtgataCAGGCTCATCAGTGCAGAGAGGGGTCTCCTTCCCCCCTCGCCCCGGTTCGGGCTCCGCCCTGTCCCCTGCTGGCCCCggggagaggagagagtgctACTACAACATCGAGCAGCAGGACTCCTGCAGGATCCTCACACACAACTCCAGCCTGCAGGAATGCTGCTGCACTGTGGGACAGGGCTGGGGGCTGCGCTGCCTCTACGACACCTGCCCCACACCTGGCACAGCTGAGTTTCAGGCTCTGTGTCCGAGCGGGCGGGGTTACGTGACTTCCACAGTGGGGGCCTACAGCTACAAGGATGTGGACGAGTGTAAGCTCTTCGACCCTGAGGTGTGTAAGGGTGGCGTGTGTGTAAACAACATCCCTGGCTACTCTTGTTACTGCCCCAGTGGACACTACTACAATGCCACCCTAATGGAGTGCAGCGATAATGATGAGTGCCTCAGTAAAGACATGTGTCCTGGTGGTCAGTGTGTCAACACACAGGGCTCATTTTACTGCATTTGCGAGCCTCCTCTAGTGCTGGACGAAACACAGCGCAACTGCGTCAATATTTCTGACTTTTCAATGGaAGCGAAGCTGTCATACTGTTGGCAGCACATTACCCCCGACCTGATGTGTCAGAGTCTGCTGCGGGGGGTGCAGCTTACATTTGTGGATTGCTGCTGTTTGTATGGAGAGGCATGGGGGCTACACTGCGCACTGTGCCCTCGAAGAGACGAGccGGATTATGAGGTTCTGTGCAGAGAAGTGGGTCCTCCTCCCAACTCTCCTCGTTACGCTGAGCGCTTTAATCCAGTGCCTAGGAGAGGCGAAGACTACTTTCCACCATACAGCCCCCTAATTTACCCCGATACACTGCCGGGCGCGCCAGAATACGGCCAACCTGATTACGATGACTACAGCCCGGTGAGAGGAACCGGGCCACGCTCCGGACTCCGTGAGCGAACACCTGGCTCATATTCACCTTATGTACCACCTGGACTCGGCAGTGATCATTATTATGAGGATTATGACGCAGCCCCTCTCCCCCCATATGGAGTGCCCAATCCCCGTGGTGAGCGAGCATTTGGAACACGACCTCAGCCCCCTCGGGCCGAGGGACGTCCCTTTAGCCTGGCCCCCTTGCCTGAAGACACGGAGAGGGAGGAGCCATGGAGAGCCGCCGCCCCCTTCCCACCCTTCACTGACAGGCGTGTGGGAGGAGACCCACCGAGAAGAGTGTATGAGAggcaGTACGAGCCGTTCGCTGGGCTGATGGAGGGGGAGTGTGGGATACTGCAGGGCTGTGAGAACGGCCGCTGCGTCCGTGTGGGAGAAGGTTACACCTGCGACTGCTACGAGGGATATCAGCTGGACATCAGTTCTATGACCTGTATAGATGTGGACGAGTGTGACGACCCGACCTTCCGGGAGTGTGTGAACGGTCGGTGTGTAAATACGGAGGGTtcgttcaggtgtgtgtgtctcagaggATTCATCATGTCACGGAGACCAAACCACTGCATTCCAGCCTAATCTCCAAAATACTGAGCAGGaggggtacacacacacacacacacacatatatacatacacacattaacacCAGCATTAAATGACCAGTATTAGCTGGCAAGGTATGCTATTTGGTTGGAATGGTTGTATTGTGGctgtaaattcttttttttatatattttttgtattcttttatatattaaataaataatctcaCAGATGCAGTGTACAGGTATCCACCAGTGCATACaaagttctttatttttaatggcCAATCAGAACCAAGATAACTATGCTGAGACGTAGAGTGGAGAAATGCTGAAATGATCTCTGTCATAAGTGGCAGACTAAGGGTTCATTTGCATCAGTGATTACACAGCAAATGGCAATTACAGGGGTCCAAGCACTGTGCCTTATAAAGCTACCAGCGCACAGATAATTAAATGATGGTCAGTGGTTTTAGACTGGCCTTAATTACAATATTCCAGCTGTGAGGCCTCATTAAGAGTGTTGGACATGACTTGAACTCAGTGACCAACACAGTTTTACATCAGTTACCactatgttttaataaaccaAAGCTTTCTACTTCAACATGAACTTATTTtgttacataaacacacaattaCTGGGTGTAAATTCTTAGTTTTACATCTTAATTctagggctgtcaacgttaGTGTTCATTTTTGAATGCAAAGTAATCATATGGCAAACAGAgctttttgattttatttagcgATATATAACACAGCAAcacttactttttatttatgctgaaatttagactctctctccctcactcacatgtgcgcgcacacacaataaatgttaatttttcctCTGTTTAAAGCTCTCTCTTAAACCCAGTAACTAATCACACTAAGCtttctaatttaaaaagcattaaaacaagcctgagatattaaaatgcattaaaaaattacaaaatacaggaaaataccaccattttaataaacagaatcATTATTTGAATAAGAGACTGACAAcactaatttaaatgtaattacatttttttccaatcttacacttattcttttattcacttttaaaTAGCCATATTTAAAACTTGGTcttaaagagaagaaaagtattatttttaagaattatgtTGAGATtgatctgattattttttttaatcaataaacaCCTCTATTgaattaacatttaacataattttctgcattgtaatCATTCATGTGTGTTTACTAGAGAAACAAAAGCCTTTACCGGACACACTGTGGCGCTTTAATGTAAAAGCAGAAGCCCGTAAGCCTGATAGATGTCTCTGCATGTCCTAAATCCACTCCCACAGCATTTTAAACTAAAGCACTCTACCAGCTGTGATCTAGAACCTCCCTGTGTTTccttctaatatatatatatatatatatatatatatattatatatatatatatatatatatatatatatatatatatatatatatcagcttctgTTTACACGTAAGCCTCCCACTGATCTCCTGGGAACTTTTTCGGCTCTCCTGCTGGAACCAGTTTACTAGAACTTCCACTCCAGTCTAAGCTGAACCCTGTTCTGTTACAATCCGCCTCTCTTTATATCAGTGGATCAGTTTGTGTATTTTATGGGAATTCTGATGCCGACACATATTTAGATATAGTTTATTTGAAAACAGTTATACATGATTATGTATTAaaatttctttttcattttttaataatgttatgtTTATATTTGGGAGGTGGGCAGGGTGTTTCCACAGTTCATTACTACATGTTAACACAATGCACTGTatctgtggaagagttttacacCATGATtaagtgtatattttttaaataagaaatttgtttgtttgttttgaattTTGTCAATGATTTGTTTTTTGATATGCCCAGTGCTGATGTATgaaactgaaaatatatttacacatattccaattgtgttgtgtgtttattgaCCGTGCCATATCTATTTTTATTCATctattaaaatcttaaaaacga

Function

GO: NA

KEGG:

id description
K08023 LTBP2_3_4; latent transforming growth factor beta binding protein 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210470 lncRNA upstream 21914 395765 ~ 399614 (+) True G155250
TU210471 lncRNA upstream 21914 395765 ~ 399614 (+) False G155250
TU210467 lncRNA upstream 21914 398076 ~ 399614 (+) False G155250
TU210468 lncRNA upstream 21914 398076 ~ 399614 (+) False G155250
TU210440 lncRNA upstream 60831 344963 ~ 360697 (+) False G155233
TU210550 lncRNA downstream 49964 587842 ~ 590204 (+) True G155283
TU210572 lncRNA downstream 53796 591674 ~ 593996 (+) True G155300
TU210608 lncRNA downstream 157648 695526 ~ 703112 (+) True G155328
TU210615 lncRNA downstream 182417 720295 ~ 724186 (+) True G155332
TU210621 lncRNA downstream 210956 748834 ~ 749156 (+) True G155336
XM_007251567.3 mRNA downstream 14051 551929 ~ 563776 (+) True LOC103040340
XM_007251642.2 mRNA downstream 141117 678995 ~ 681903 (+) True LOC103034482
XM_007251569.3 mRNA downstream 166477 704355 ~ 713021 (+) True blvrb
XM_007251568.3 mRNA downstream 176031 713909 ~ 718705 (+) True sertad3
XM_022679465.1 mRNA downstream 389841 927719 ~ 952480 (+) True daw1
TU210384 other upstream 268265 149347 ~ 153263 (+) True G155206
TU210867 other downstream 665863 1203741 ~ 1214663 (+) False LOC103036073
TU210855 other downstream 727942 1265820 ~ 1269379 (+) False G155491
TU210857 other downstream 727942 1265820 ~ 1268195 (+) False G155491
TU210859 other downstream 727942 1265820 ~ 1268195 (+) False G155491
TU211262 other downstream 2200483 2738361 ~ 2755112 (+) True G155776

Expression Profile