RNA id: XM_022679474.1


Basic Information

Item Value
RNA id XM_022679474.1
length 3180
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC103036983
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1662978 ~ 1673194 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGAAAAAATTGGCGCCAAGTCTGAGAACTAGTCAGATTTATCCGCAGTTCAGCAAAAGCGGGTACCGTTTAGCTGCAGAAGTCTTTAGACCTGTTGGAGCGGGCGGTGACCGGCTGTACTGAATACTAACGCTCCATGTCTACAGATATTAACCCAGAATCTGCGGAGAAACAGAGGTCAACAGAATGGCTCTTTCCAAAGCTATTTCATCAGCAAGATACTGGAGGTCATCTGATCAACATATCCACATTAATAAATGCACGTTTGGAGAGCAGGCCAGAAACAAAATGGACAAAGCAAAGCGTGAGCAACAAAGAGATGTTATTTTGCAGTGTGTCTGCGCTCTGTTGAATTCTGGAGGTGGAGTTATCTCAGCAGGGGTTGAAAATGAGGACTATGATTATTGTACCATGAGTCTTGGGGAAGACATGCAGATTTATTTGAAGAGTTTACTGAATCCTGCCAATATTGAGGATTTCATTGAATTTGTTCCATCTGGTAATGCATTACAAATGTATGTGAAGTCTTGGTGTTCACATGATAACAGAGCAAGACTCTGTAGTGTTGACAGTGGCTTAAAGGAGAGATCAGGGACATCCACGCTCTTCATACCCCCTAGTGGGGTTTTGgactttataaaaaagaaacgTCAGACTCTTTATTCGGGTcctcctgcaaaaaaaaagtggacACAAGGTGATGAACTGATCTATCAGAAAGCTGAACAATTCTATGAAAAACGAGAGGCACGTCTTGGTCAGATTTTAGATTTTGGAGAAAGTGTAAATgttgagtttaaaagctttgacAGTGAGAAGAATCTGGAGAAGAGACTTAAGGAGAACCTTCCCAAATACCTTTCAGCTTTTGGAAACACTAAAGGGGGGTTCCTAATCATCGGCGTTGATGACCGAAGCAAAACAGTCGTTGGCTGTGGTCGGGGAATGGATGCCCAGACGATGGAGCAGATGATCCAGGAAATCTGTAACAGAGCACAGAGCCGGGCTTTTCATCTCCTGGACTGTGCACGAAAAGAGGAATGGTCCGTGGATTGTGAAGTTTTCGAAGTTATGGAAAACAGTGGCGAGGAACCTCGATATATTGTTGGATTTAAAGTTCCAGCCTTCTGCTGTGCTGTTTTTGAGGACAATCCAAAATGCTGGCATATTGAGAATGATGCCATTACTCTACTGGACCCAAGAAGCTGGTTAGAGAAAATTCAGCTCTGTGATCCTGGTAATGAGTTGAGCAGCCGTTTTAATAAGGTCTTAAGTCTAAAAGACTCCCCACCTCAGTGCAGAGCGGTCTACAGCACCCAAGACATCACAAAACTCCAAGAAAGAATATTCTCTGTTCGGGAGGAAAATGTGTTGTCCAGGTACATACCACAGGAGCTTCAGAAATACgaaaaacttttaaacattCCTCCCATTCAGTCGAGGAGTGGACCTGGAATTTTAATCATGTCTACCAGCTGGGCCATTGATGTGAACTTACCACGAAACAAGTCTGTCATCTGTGAAGCCCTGCTGATCAGTACAGACTGCTACCCCACACTGTTCTGCTGGGCTGAAGGAGACAGTCCAGAACTCTGGCAGTACGTTAATGACACTGCTTTCAGTCTGAAGCAGAAGTTGGTGAATCTTGCCGGGTACACAGGAAGGCTTTGTGTGATCCCTCGTCTGGTTAACTGCCAGACAGGAGAAGTGATCCAGAATGAGACTGACGGTGCTCCTTCTTATCCAGACAGTTATACTCTGGGCCATATTGAAGAAGTACTGGCTTTACTACGGTCCTTAACTATAGTTGTGATGAGCATCTCTTCACCTCTGAGTGACACACTCGGCTGCGAGTTCTTCAACCTGTTAACTGAGGTGCAGTATACCATTCTAAGTAGTTACAATGGTATTAGAAGTCTATTGATCTACGGGCCTCCTGGTTCAGGAAAGACCCTGATTGCCATGGAAAAAATACGGAGGATAAAAAATTCAGACAACTGTGAGGATACGGACATCCTGTATCTCTGTGAAAATGTGGGATTACGAGACTTTGTAAGGAAGCAGTTCATTTGCTTGTGTGAGACAAGAGCCAGCTTCATGAAGAGTCCTGAGGAGACGTTTTCCAGGGTTAAGCACATAATTGTGGATGAAGGTCAGAACTTTCGCCTGGAGCATGGTGACTGGTACAAGAAGGCAAATAGACTGGTAAGAAATGGTGGAATTTTCTGGATCTTTGTGGACTACTTTCAGAGAAGTCACACAAGCAGTAGTGGTCTGCCACCTCTGAATTCTCAAAATGAAGCTTTTCTCCGTGAGGTTGTACGAAATTCAAAAGAGGTGTTTGATGCCATGTTAGATCTAATTCACCAAATTGCTGATAATTCAAAACCTGAAGAAACAGCACACTTCCAGGATATGGTGAAGAATGTAACACTGAGCCACTCTTTCAGAGGAAAGCTCATCAGACGCACTAATCTTCCATCAGTGGAGACAGAAGTAGTTAAAATAATCAGAAATCTTCTGCAACAAGGGCACTCTGCCAATGACATTGCCGTCCTCTATTCCACTAAAGAAGAGCTTTGTAAAAGGGAGTATGGTgttaaaaaagagaagttgCCTGTCCAGTTTGGCAGTGTAGAGAACGTACACCAGGGCGTGGTTGTGCTGGACACCATTCGTAGATTTTCAGGCCTTGAAAGGAACATTGTGATTTTGGTGGACCCCACTGTTCATTCGTTTCAAAATGAGGTTGGGGTAAATGTTCTCCTCAGTGCGTTCTCCAGAGCGAGAATCAGACTGTATGTGTTGCAGTCAAAGCGTTCAATACTGACACCTAGAATCCCTTTTTAGCTGGTTGTAATAAAGTAATGGTTTGGTTATGATCAGGGCTGGGATTCTTAAAAAGATGTTGATGAACAGCATATGCACAAAAAGGATTAGGTTAAAAATATGTAACAGTTGAGATTTAGAATCTAATGTTTTGACTTGTATATTACATTACTGTTTTGCAGCAGTAGGTATGTTCTTCAGTACTTAAGACACTCTGCTctgtaactttttaataatgtcCACTCACAGCTGATGGTGGAATATCTGTTACCACACTGTTCTTTTTCAGAGCAAAAGCTGGTCAGGTGCTTGATTTTATTCATCTGTGGCAATAGGACTGATTTGAACACt

Function

GO: NA

KEGG:

id description
K24459 SLFN13; schlafen family member 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211136 lncRNA upstream 12043 1643959 ~ 1650935 (+) True G155680
TU211133 lncRNA upstream 14352 1631865 ~ 1648626 (+) True G155677
TU211125 lncRNA upstream 65363 1597104 ~ 1597615 (+) True G155669
TU210993 lncRNA upstream 191556 1470141 ~ 1471422 (+) True G155576
TU211143 lncRNA downstream 5351 1678545 ~ 1680366 (+) True G155685
TU211187 lncRNA downstream 90213 1763407 ~ 1765707 (+) True G155717
TU211192 lncRNA downstream 101247 1774441 ~ 1776874 (+) True G155718
TU211196 lncRNA downstream 253240 1926434 ~ 1947167 (+) True G155722
TU211197 lncRNA downstream 253240 1926434 ~ 1928724 (+) False G155722
XM_022679961.1 mRNA upstream 4016 1652654 ~ 1658962 (+) True LOC103036673
XM_022679960.1 mRNA upstream 40806 1567115 ~ 1622172 (+) True trip12
XM_022679466.1 mRNA upstream 205452 1415407 ~ 1457526 (+) True LOC103025301
XM_022679467.1 mRNA upstream 205452 1415407 ~ 1457526 (+) False LOC103025301
XM_022679468.1 mRNA upstream 205452 1415407 ~ 1457526 (+) False LOC103025301
XM_022679476.1 mRNA downstream 19404 1692598 ~ 1905714 (+) False tspan4
XM_022679477.1 mRNA downstream 20478 1693672 ~ 1905714 (+) False tspan4
XM_022679475.1 mRNA downstream 82758 1755952 ~ 1905714 (+) True tspan4
XM_022679481.1 mRNA downstream 998309 2671503 ~ 2720959 (+) False lrch3
XM_022679484.1 mRNA downstream 998309 2671503 ~ 2720959 (+) False lrch3
TU210855 other upstream 393599 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 394783 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 394783 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 448315 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 1509715 149347 ~ 153263 (+) True G155206
TU211262 other downstream 1065167 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 3483960 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 5699182 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 5714308 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 5927373 7600567 ~ 7606668 (+) True G156840

Expression Profile