RNA id: XM_022679475.1


Basic Information

Item Value
RNA id XM_022679475.1
length 3773
RNA type mRNA
GC content 0.47
exon number 7
gene id tspan4
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1692598 ~ 1905714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agaaGGAGCAAAGGAGGGAGTAAGACATTGACGGAGAGGGGGGCGAGAGActaagagcgagagagcaatggaaagagagagagaacgagagagagggagaatgaggGAGCTCCAGGCACTCTGACTGGACTCCGGCTCCAGCTCTGCTTCTGCAGTCTTTCCAGCTTCCTCGGAGGAATACGGTCCAGCTTTACGCTTCCGCAGCCTCTCCATCCTTTCAATACCTGAATGCGGGAATAACCGCACCAGGAGAAACGGAGGGCAGAAGGAGAGCGACAGAGCCAGGGAATAACTTGGCGCTCAATTCCACTGCTGGGACATCTGGATGCGCACCTTTTTTTGCCTGGAGGGAAAAAGAGAACAAgcggaagagagagaagagagtgggagagagagagaggaagagaagaaagatAGGGAACAGGCAAGAGCAAAGAgaggaaaggaaggaaggaaggaaggaaggtcAAGACAGacagtagaaataaaaagacaaacgAAACAGAAACAGGGAAGGGAAGTCCAGAAAGTAAGAAAGGACAAAAAGAGGTGTTCAGAAAAAAAGGAGCAGAGTAAAGAGACAGGTAAAAGAAAGACAGCAAAGAAAAGAATAGAAAGAGCACAGGGAAAAGAAGCTAGTCCACATGACGCTCAAGACGTTGCTGATCCTCTAGACTAGAAAGCTGAATTTGGCTGCTGCACTCTGCAACGAGTTTCTTGGCTCAGATGCTTCCCATCATTTCTGAATTATTGGACTAGCttatctgtccatctgtctgtccatccgtccatccatctgATCTGTCCAGCTGTCCGTtcatgctgtctgtctctcagctTCAGTCGTTATGAGAAGAAGACCTTGGCAAAGCTGCTGGTGTCAGTACATGCATAATAGTTTCTTCAAAGCCGAAGCAGCGGCAAAGAATTTGTGACAGTATATGTGCATGAGTGCATGGGCTCTTTCCGTTTGTGCAACCTGCCCGTCTCCACACTTTCCCATCTGCACACCTGTCTGCCCACCTGTCTCCCCATCCACATGGCAAGGCTCCTTTCAGAAAGCAGTCAAAGTGCCAACTGACGAGATTAACGACTGTTGGACTGTTTAAGCTGCTGTCGGATTGAAGCTTTAGGACCACTTAATCCCATTGGAGGAGCATGTAGGCATTAGATAGCGAGGGAGTAGAAAGCGATTGTGAATAATGGATTGGAGCTTGCTTGGATTTTGAAATTTGAGAGGGGTGATAGGACTTCACATGGATTTGCTGAGGATTCTGCTGGTGCTGAAGAATGTGATGTGACTCTGGAGTGAACTTACCTTGAATTCTGACCTTTTCGGCTTATTGGAAGCTCTTGGAATCATATCGAATAAAACAAACTTGTACCTTTTTACAGGATAGCTGGGACATTTTACGTCTTGAGGTGTGAATCTGAGACTGTAAGCTTGGGTGGTAGGGGCATCTATGCAGTAcagaaactaaaaacatttgtaaTTGGAACAACTGAGGAAAAAACAACTAATTCATCACGTCGATTAAAGTATGGATTTTAGACTGATGCTCTAGAGTTGGTGCAaaatctctgcaagtgtttTAAAAGAATGTGAACTTTTCATTACTAAATAAGacactctctcattctcaaCTGACTACACACCAAACTACAGAGTCTTTTCTCTCTGATTTTCTTCTGCATCAGCTTCTTTTCTCTTAAATTGGTGCTAAAACTTTGCCGAAGTGGGGATCATTTGGCCCCTGGGGGCCCCGGTGCCCGCACCGGCCCCCAACCCCAAGATGCGCCGCTCGAGTACGGACGAGACTCCGTACCGGCGCAGTCCATCTCTAGACAGCAAGCCGGGCTCGCCCCCGCTGCGCTACAGCGGCGAGTACGAGTACCGTAGCGCGCCCTTCGGGTTCGGCTTCCGCACGGCGCCGGGCTCGCAGACGGCCAAAGCGGGATATGCCACAGCGCAGGGCAGGAAGTACGTGGTGTTTTACCTGGACCTCTCCTTCATCTTTCTCCTAGAGCTGCGGCGCTGCAGGATGGCCGAGGGCTGCATGAGGGCCCTGCGATACGCCATGGTCTTCTTCAACCTGCTCTTCTGGctgggGGGATGTGGGATACTGGGAGTGGGGGTGTGGCTGTCAGTCACCCAGGGTAACTTCGCCACACTCTCGTCCTCCTTACCGTCCCTATCCGCCGCCAATCTCCTCATCGCTATGGGAACCATCATCATGGTGATCGGTTGTCTGGGCTGCGTGGGAGCGGTCAAAGAGAGTCGCCCCCTGCTGCTGAGTTTCTTTGTTCTGCTCCTCTTGATTTTCTTTCTGGAGATCCTGTTCATCATCCTCTTCTTTGCTTATCAGGATCAGATTGACCAGTATGctcaaaatgacctgaagaAAGGTCTGCAGCTCTTCGGCACAGAGGGAAACATCGGCCTGACCAACGCCTGGAGCATCGTGCAGACTGATttcCGCTGCTGTGGAGTGACTAATCACACGGACTGGTTCGAGGTGTATAACGCCTCTCGTGTTCCGGACTCCTGCTGTTTGGAGTACAGTGATAACTGCGGCCTGGAGAACCCTGGAACATGGTGGACAGCGCCGTGCTACGAGAGAGTGAAGGGTTGGCTGCAGGAGAATCTGGTGGCTCTGTGGATCTTCGCTCTGTGTGCAGCTCTGACGCAGatTTTAGGGCTGGTGTTCTCCATGACTATGTTCTGTCAGACGGTGAAAGTGGACACGTTCTACGCCTAGAGAACGGTTCTCCTTAGAGAACCTGAAGGACAATGAACTGAATGATCTTAACATCACAGACAATGGAACAAGGGAAAACTGGAGTGCtccttgttttctctctctcttccttcttGTTTCTGCTCATCCTCGTCCACTTTTCCTCCTTCACCACttccctcctcttcttcttcttctacttcttttttttttatataatatctcTCACTGTGCTGGACGTTCCTCCAGACGTTCCTTCAGACGGatcttttcagtgttttctgaagTAATTGAAAGTTTGACGAGAAACTGACGAGAAATGAAAGCTTGCATAACACAGGAACTGATCTTTTTATAACTACTAGCTAGACCGGACTTTTTATTCATacgaagaacaaaaaaaagaagaaaaaacaatcTGTCGTGACTCTACGATTCTACGAGACGTCCTCCTTCAGACCTGCCACTCCACTGAGCCAATCAACGAGCCAAAAAGCTGCAGAGGAGCCCCGCCTCCTTTGTTCCAGCGACGAGACACCAGTAACCAGTTTCCTGTGGTTTTAAATGcctattattttgtttaaaactaAGATATTTATTACAGCaacctataaatatatataaatatatatatatactattctTTCATAATGGATATTACTCTTACAGCACATAGAGCAGCATTGTGAGGAGAGACCGCAATCTGCTCAACACTGACCCCTGCTGCCAGAAGAACAGACTTACATCACAGAATTTacctttacatttatatttacattgacatttacATGTTTAGCACATGCTCATATTGTAGACattgtaaaaagaaaacacacaactGTGTCCTGTGTCCAACATTTATACCAACCTGCTCCagcgagagaaagaaggagaagaagaagaaaagcacAGTTAGATAAAAGCACAACATCCCAGACGAAAAAAAGCTGAGAACTGTTTCTATTCTAGGCTGGAAGTGATGGATTGCATGGTTTAACTggtgaagagaaagagagaaataaagcatGAAATGTT

Function

GO: NA

KEGG:

id description
K17294 TSPAN4; tetraspanin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211143 lncRNA upstream 75586 1678545 ~ 1680366 (+) True G155685
TU211136 lncRNA upstream 105017 1643959 ~ 1650935 (+) True G155680
TU211133 lncRNA upstream 107326 1631865 ~ 1648626 (+) True G155677
TU211125 lncRNA upstream 158337 1597104 ~ 1597615 (+) True G155669
TU210996 lncRNA upstream 284530 1470141 ~ 1471422 (+) False G155576
TU211196 lncRNA downstream 20720 1926434 ~ 1947167 (+) True G155722
TU211197 lncRNA downstream 20720 1926434 ~ 1928724 (+) False G155722
TU211198 lncRNA downstream 20720 1926434 ~ 1930673 (+) False G155722
TU211199 lncRNA downstream 20720 1926434 ~ 1942175 (+) False G155722
TU211231 lncRNA downstream 669366 2575080 ~ 2575382 (+) True G155750
XM_022679474.1 mRNA upstream 82758 1662978 ~ 1673194 (+) True LOC103036983
XM_022679961.1 mRNA upstream 96990 1652654 ~ 1658962 (+) True LOC103036673
XM_022679960.1 mRNA upstream 133780 1567115 ~ 1622172 (+) True trip12
XM_022679467.1 mRNA upstream 298426 1415407 ~ 1457526 (+) False LOC103025301
XM_022679481.1 mRNA downstream 765789 2671503 ~ 2720959 (+) False lrch3
XM_022679484.1 mRNA downstream 765789 2671503 ~ 2720959 (+) False lrch3
XM_022679479.1 mRNA downstream 765789 2671503 ~ 2715724 (+) True lrch3
XM_007243985.3 mRNA downstream 765789 2671503 ~ 2715724 (+) False lrch3
XM_007243988.3 mRNA downstream 765789 2671503 ~ 2715724 (+) False lrch3
TU210855 other upstream 486573 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 487757 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 487757 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 541289 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 1602689 149347 ~ 153263 (+) True G155206
TU211262 other downstream 832647 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 3251440 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 5466662 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 5481788 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 5694853 7600567 ~ 7606668 (+) True G156840

Expression Profile