RNA id: XM_022679487.1


Basic Information

Item Value
RNA id XM_022679487.1
length 3709
RNA type mRNA
GC content 0.40
exon number 10
gene id parp9
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 2792039 ~ 2806754 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTTAGGCTTTTGCTTTCGATTTTTTAACATCGACGCAGTTAGTCTCGGCGGTTgatttgttgtttgtgaaaacCAGgTGCCTTTGAGAAAAGGATTTAATCAGATTCCGTTCTCTGGGTTCACTTTTAGTCTTGTGCTGGAAAGAAATGCCTGGAGATCCTATTCTTCCACTCTCAGATGAAGGGATACAGATTCTGGAGCAGAGTTGCTTAGACTTTTCAGATGCTGCAAAGGGAAAATTTGGCTGTACAGTTGTCGTTCACAATGTGGATTTTACCGCTGCTTCAGTGTCTGGCAGAAACAAAGGGCCTGATATTAGGTACACTAAACAGCTATCTGGAGGCATGAAGATATCAGTGTGGAAAGATGATCTCACAACTCATAAAGTGGATGCTGTGGTCAATGCAGCCAATGAGCAGTTAAATCATGGAGGAGGTCTTGCCTTAGCTCTCAGTCGAGCTGGAGGTCCTACCATCCAAAACGAAAGTAACCAGTTTGTGAGACAAAATGGAATAGTGCCTACAGGTAAAGTTGCTGTCACTAGAGCTGGAAAACTCCCTTGTCAGATTATCATACATGCGGTTGGCCCCCAGGTACCTAGAAATCCTCCACAGTGGGAGATAGATGCTGCTTCACCCCTTCTGCAGGAGGCTATTTGGAACATCCTAACATACACAGATCATAACAACTCACAGTCAGTTGCAATCCCTGCTATCAGCTCTGGCATTTATAATTTTCCTCGGGACCTCTGCGCAAACATCATTGTGAACACTGTGATCTCGTTTAGTAATAAACGAAAACCAGCCCAGAGCTTAGAAGTTCGTCTGGTGAATAATGACGACCCCTCCGTTCAGGAAATGTTAAGAGCCTGCCAGCAAATTCTGGGACCCTCGGACACACGTAGTGGTGCAATGCAAAACCAGAGCATCTCGTCAACCAAGTCTACATGTCCCAGACTGGAGCTGGGGAATGTAACTCTATTCCTCAAAGAGGGGGAAATACAAAAGGAGACAACAGATGTCATTGTAAATCCAATAGGAAGTGACCTTGACTTGTCCTTAGGGTATGTTTCCCGTGCTATACTGGAAAAGGCTGGCAAAGGAATTCAAGATGAAGTAATAAGGAAAAAGCCTTGGAATGTCACTAATGGTACTGTTATTGAAACAAAAGGCCATAACCTGAAATCACATGCAGTGTTTCATACTATCTGTGATGTGCAACAGTCCAAAACCCAGATTCTCCATAATGTGATCACACAATGCCTCAGAAAGACGGAGGGATATAGCTTTTCAAGCATATCATTCCCTGCTATCGGCACTGGCAAGCTTGGACGTAGCAAAGAAGAAGTTTCTCAAAAAATGATTCATGCAGTTGTAGAGTTTGCTGACAAATATAAAGGAAAGAAAATGGAAGTGTACTTTGTCATTTATCCAACAGACACTGAGAAATTTCAGGCTTTTAAAAAGGAAATGGCTTCTGCAAAGCAAAAATCTTCCAGAATCCCCAGCAAGGCTGTGAAAAACTCAGGCTTTTATGATGAAAGAGGCACTGGAACAACCCCACTCATTGAATTCCTCACTGACTCTTCTGAGGTTCTAAGAGAAGCTAAAGAGTGGACTCTGAAAATACTCCATGTACCATCTGGTTCGGTCACAATTCAGAATAACCATGTCATCCACTTTGGCCAGGAGGAGCATGAACACCTGATGTCCCTCCAGACTGCATTACATGTATCAATCACAGAGTTCTTCAGCAACGGCAAATGTGGCATCATTATCAACGGGAAATCCACAGGAGTCAGCTGTGCAGCTTTAATGGTAGAGGCCATGCTCTGCAAAGCGCAAGAAAAATTTGCCCAGGCAGAAGAAAACGATCTGCTGCACTCTGTGGTCTCCTGGCAGGCTTTCCCAGGCTCAAATGAACCAGAGACCAATGCTGCTTTGGAGAAGGCATACCTTGCCAAAAATACAGATATTACAGTGAATGggcaaaatgtacaaattgaCTCCAGGCATCGGATagGTCTGTTCAGTCTCTATGAGGGGTTGCAAGGGTTGCAAAGCAAGTCATATTATCAGAGGACAACTATTGACATGAAGAACTATGGTCCGAGAAAGGAAACCTTCCTCCTAAGTGGACTGAAAATTGAGAAGGTGGAGAGAATTGAGAACAACGCCCTAAAGCAGGTCTTCGAGCTGAACAAGAGGCGGATTTCAGCTCAACCAAAGCAGCTGTTCCAGTGTGTGAAAGCACaatactgtgagctgatttccAGGGTGGGCTTCCAGAGGGACTATGCACCACCTGAAGAGCAAAAGTTTGGAGCTGGAATATACTTCACTAGTGATCCGAGGAGAGCTCTGGAGCTGTGGCAGGACAGAGAAGAACAGTATATTTACATCATCGAGGCTCAGGTTCTCACTGGACGTTGCACATCACAAGGTGCACCACAAATGATTGTGCCTCCTTCTACAGCTGACACTCAGGCACAGTATGACAGTGTATGCAATAAGGCAAGAGACACGTTTGTCATCTTCAATGGCCAACAGGCTCTACCTGAGTATATCTATACATGTACCATAAACAAACACTGAGCCAGATAGAAGCTCAGGGTCATACTGTATAACATATTTACCAATACAAGTGATcaaattatacatataaaaaatccATATATGGTGATACTCTGTTAATACAGTGAGGTGGAGGTTAAAGTAGGCctagttgtagttgtagtgcATTTATTGTGAGGGGAAAAGTACATATGTATAATTACTTGCAATTTTGTCTACACTCATACAAATAATCTTAATGCTACaattaacacaaatattttgATGCTTGAAGGAAGTACATTTTAGGGGTGAAATATGATTATGAATATGGCAaatcaattattaataaaattttggaaaatgtaaatttcagacaacaatttaaattaaagccGTTTGGCACATCTGTACATTTTACTAGGCATAAATCATTAATGGTGAATCCTTGAAAGAGTCTTTGCATATTGCTTTGAATTTACCTATacatttgctttattttgtttacagaaaatcAAAATGTGTCTTACTTTTACTGTTGTGGGAATACTTTgaaatttttattgtatttctgaTAATATTTGAGGTGCAATGgtgtactgttttgtttttctttgacaAGAAATGagattgtgttttattgtagaTATAATGGTGTATATAATATGGTGCACTCCTGTTCAGGAATACAATGATTCAAGATGTAAAATTGAAGTAAATCAGCAGAGTTACTTCAGAGCAATGATCAGTGATTCctttattttcagatttgttttttgttttaatgtaagCAAATATGTCTTTTTAACCAAATCTATCTTATTTCAAAGAAGAAACAGCAGGCAGGAAGCATTTCTGCAAATGTAGTCAGAAAGAAGTTTGTAGATTAGATTAATCTTTACTAGATCTAATCTGGTAACACAAACATAATGTGGCATTGTCTGCCAAcacaatgaaacaaaaacatacagtacagtcacACCGTACAGAATTTGCAACAATGTGTGGTTTCAGCAAGGTGAGGGTTTCTATTATTATAAAGACTGAGGTGTAATTTTGATCAGCTTTTTGAGGTTTGGATGTTGACTATATCTGTAAGGAGAATTGtgttatatatttgtgttaaatttgaatcaataaaagcaaaataatcaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211279 lncRNA upstream 12259 2780128 ~ 2780371 (+) True G155793
TU211278 lncRNA upstream 12747 2779587 ~ 2779883 (+) True G155792
TU211271 lncRNA upstream 21777 2770090 ~ 2770853 (+) True G155785
TU211248 lncRNA upstream 57966 2734462 ~ 2734664 (+) True G155765
TU211244 lncRNA upstream 72892 2699031 ~ 2719738 (+) True G155762
TU211296 lncRNA downstream 20842 2827596 ~ 2828274 (+) True G155809
TU211350 lncRNA downstream 184205 2990959 ~ 2991367 (+) True G155854
TU211353 lncRNA downstream 208950 3015704 ~ 3035326 (+) True G155856
XR_002651196.1 lncRNA downstream 222821 3029575 ~ 3030104 (+) False LOC111194715
TU211355 lncRNA downstream 222889 3029643 ~ 3030986 (+) True LOC111194715
XM_022679481.1 mRNA upstream 71671 2671503 ~ 2720959 (+) False lrch3
XM_022679484.1 mRNA upstream 71671 2671503 ~ 2720959 (+) False lrch3
XM_022679479.1 mRNA upstream 76906 2671503 ~ 2715724 (+) True lrch3
XM_007243985.3 mRNA upstream 76906 2671503 ~ 2715724 (+) False lrch3
XM_007243988.3 mRNA upstream 76906 2671503 ~ 2715724 (+) False lrch3
XM_015606067.2 mRNA downstream 76073 2882827 ~ 2938070 (+) True LOC103044837
XM_007230030.2 mRNA downstream 136020 2942774 ~ 2963551 (+) True ndufa10
XM_022679492.1 mRNA downstream 804264 3611018 ~ 3614491 (+) True LOC111194753
XM_015601072.2 mRNA downstream 1051752 3858506 ~ 3899215 (+) True LOC103025504
XM_022679493.1 mRNA downstream 1053904 3860658 ~ 3899215 (+) False LOC103025504
TU211262 other upstream 37518 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 1523251 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 1524435 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 1524435 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 1577967 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 2350400 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 4565622 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 4580748 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 4793813 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 5763176 8569930 ~ 8570877 (+) True G157055

Expression Profile