RNA id: XM_022679497.1


Basic Information

Item Value
RNA id XM_022679497.1
length 4276
RNA type mRNA
GC content 0.57
exon number 23
gene id LOC103036857
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4008326 ~ 4123480 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATTCATTCAGACTGAGGGACAGACCTGCGCTCTGCGGATCACTCAGCCCGGGCTCTGGAACTCTGGATGGGCGCGCGGGGCTGAGCGgggctgctggagctcctctgCTGCCCGGACCTCGTTTTCCTCGCGCTGCGGCTGCAGAGTATGAGCGAGCGGAGAGCGGAGCGGCGCGCATGGCGGGCGGAGTGAGGAGGGCGCGCGGGGAGCCAGGCAGGTTCAGCCGCCGCCGccgatgctgctgctgctgctggagccccggagccgcactgctgctgctgatgatacTGCTGCTGATGCGGCTGCACAGCTGCACAGGGTCCAGCACGGATGACTCAAGCTATGAGGCGTCTGGATCATCAGTGTCTTCTCTGGACCAGGCCACCCTGGCCACCTCTCCTCATCGTCCAACTGGCTTACTCATGACCGATGAGGATCCCATGTCAGTCATGCAGTCGGATCCTACCAGTCTGTCAAAGGGAATCCGACAGGAACCAGCATTCTCCTCCATACTGACTCTACTGGCCGACTCAGCTGAAAAACCTCAGACTCCTCTTCATTCAGGCTCTACTCTGGAAAGCTCAGTCAGGATTGATAATGAAACCAGCCAATCACCTTCAGATGGTCCCTTTCAGAGAGCAGAGGCATCCTTTAAGGCACCCTCTTCCTCTGCGGTGGTGCCCGGTGGCAACCAGTCCTCTGCCTCAGAGGACTCAGCGCTGGAGGACTGGGTTTCAGAGCTGATGTCCTCTGTGGTTCAGACGTCCAGAGAGACCAGCCTCCGCTCGAAGAGAAATGAAACTGGTTTGACTCGACAACGAAAGAAAATCTCTACGTTTTccaacaaaaacacactgacacaaacAGAACCCACCACCCAGGAGACCACAGCCACCAGTGCCCCCCAGCTAACCACCGTCACCACCACCACTGTGGCCACCACCACTTCCACAACCACCACTCCCTCTCCAGTGACCACAACCACCCAACCCACCAGCACAACCCAGTTAACCAGCACCAGACCCACTaccacaaccaccaccaccaccaccaccacctctactactacaactacaaccACTACTACAGCTAAACCTCCCAGAATGATAGCACCTGCCCGTCCCCCTACACggaccaccaccaccactaccaccaccacccagtctCCCAGGACCAGTCCTACCAGAGCCACCACCACTACTACCACCACAACTCAGACTCCTCCAATCATCTGCAACATCACTGAGAGAATGTTGGTCAGAACAGTTTTGTCCATCCACCTGCGGAGGAGCCGGCTGGACAGCATCCTGAAGCAGAACCTGCCGAAGGGTCTGACTCTGGCTCTGAGGAAAGCTCTGAACGACAGCTCGGTCCAGGCTCAGATTGAAAGTCTGACCATAGTGCCCAACGTGACGTTGGGGTACTACGTTTCTCGGGGGGATACGGTGTACATGGCGTCGGTGGTGGTGGAGGCTCTGAATGCTTATGGCTTGGAGAGACTGATGGCTGATATCCGGCAGTTTGTGCCGTTGGTGCAGGCGGCGCCGGTCCCGGCGGCCCCCTGGAGACCCACCCCGGCCATTTCACTGATGCTGAAGACAGtcctGAGGTTTGTAGGGCCAGGAGACGACCTGTCGTCCTGCAGGTTTGCTCAGATGATGGAGGAGAGGCTGGAGAATGCGTTCGCTGAGGCTGAGGTTAAAGTGCTGAACTCTTACAGCAGACTCACAGTACAGaTTCTGAGTGCGTCTCAGTCGTCCGGTTCTCCCGCTGTGTCTCTGATATACGTGGTGCGGAACGACAGCGTGGCTCTAAACGGCACCGTGGCCAGTAACCTGCTGAGCCAACTGACGGCTGAACTCGTGGGCTACTTCTTGTTTTACCCTCCTCTTATCACTGCAGAGCctTTGGAGTATCACAACCTCAACACCTCTGCAGCAACTAAGGATTTCTGGATAATCACAGTAATTCAGGATGTGGAGAACGCGTCTCTGGAGGGTCAGTACCAGAGCTTTGCCAGTTTGTTGGAGCAGCGCTTGGCCGAGCTCTTCGTTGTGGCCCATCAGCAGGGTGCTCGCTTCAAACGGGCTACCACTGTGGGCAGCTATACTGTTCAGATGGTTGCTATGAGGCGAGTGAGTGGACTGAAGAACCCTGCTGAACTGACCTACTATGTCCAGCTAAACGGCACACCGCTCCCTGGAACATCCGCTGCTAAAATCCTCAACACAGTGGACTCTCAGACCATGGCCCTCACACTGGGATACTTTGTGCAGCTACAAGCTGAACCCGTGGTGAAGATCCCGTCTAACAACCTCTGGATCCTCGCTGCTGTTTTGGCTCCCATTGGGGTCGTGaccatcatcataatcatcatcaccGCTGTCCTGTGTCGCAAGAACAAAAGTGACTTCAAGACCGACGCCATTGGCAACCTGAATCCACGAGTAAAGACTGCATACCGGAGAGACGTGGGTTATTATCATCAGCCTGTTCAGGGGTTTGACTATGCTAAGCAGCACTTGGGGCAGCAGGGTGGAGACGAGGAGACTCTACCAACCACCCAGGAGAAGCTGGTGCTGCCCCTGCCCATCCGAGACGCCTCCCTCTCTCTAGAAAAGGTCATCCGTCCAGACGGCACCAGCTCCAAAAAGGCTCTGACCAGCGAGACCAGGAAAAGCAGGTTGCCGAGCGAGGACGGTTCCGTCATCAGCAGCGAATCAGCGAAGGCCGTTCTGGGCCGAGGCTCGGCGCCGCAGAAAGTGACAGCACAGCAGAAACTCACAAAGGAGGAGAGCAGGAGCCGAAGCGATCCGTACGACACCTCCTCAGGTTCTCTCCAGCTCATCTCCATAAAGCCTATGGCAGCTCCGCCTTCCTACTCTCACCCAGCATCCTCTGACCGCAGCCAGGATTCAGCTGTCCTGAATGGAGAGgtGAGCATGGCTCTGAAGCAGAAGTCAGACATCGAGCACTACAGGAATAAGCTGAGGCTGAAGGCTAAGAGGAAGGGGTACTATGACTTCCCCTCGGCCGAGGGCAGCGTCAGCTCTAAGGCCGTGAGTCAGAGACATAGGCATGGTCAGGACCGAGCCGTCCACCCGCACAGCCCAGGAGCAGCGCACCCTCCCACCACCGCTCCGGAGTACGAGGACGAGCGAAGCTCCACCTACGTCAAGTCTCGCAggagGCACTCTCAGGTGAGATACCCCACATATCGCAGCAGGCAGTCTTTGAACAGCCCCAGCCCTGGAGGAACTGAGATGGACCTGCTGGTAATGAGAGAGAGACCCAGGAAGGGCATTCGCAACAGTGGCTATGATACGGAGCCCGAGATCATCGAAGAAACGGACGTAGATCGTCTGGCGGCTCGTCGACAGTACGGATACGGGCGTCAGGCCAAAAATCACTCCGAGACATCCACTCTGAGCTCACAGCCCTCTATAGATGAGGTGCGGCAGCAGATGCACCTGCTGTTAGAAGAGGCCTTCAGCCTGGCTTCAGCTGGCCACTCCACGTCCAGCAGAcgccaccactaccaccacccgcaccatcagcaccagcagctgAGCCCGTACAGCCCCGGGCCTCCTATACCCTACTCAGATGTGGTGACGAGCGCTCCCAGCACCATGAACCAGGGAGGCCAAGGGGGTCTGCAGTGGGTTCCAGCGTACGGGCAGGACCTCTATCAGTGCAGTCTGACCAAACCAACATTCAGATTCACCCAGCTGCCAGAGATGGCCATGGGCTCCCCTCCTCCACCCATTCCTCCAAGAACAGGCCCACCTCCTGGGTCATCACTGCGAAGGTCCTCCTCCGATCTTGGCCCAAAGGCTCGAAGCTCTGAATCATCCGTGCCAGACATGCAGAGTCAGCACGGCAGCGCCCCCTACGTGCCAGTCAGCAGAGCGCCACTCCCACCTGTCACCACAGAGCCTATACCCAATCACTCAGGAAACCCCATGACTGCTGTGTATGCTATTCCAGCCAGCAGACCAGGATACACAGGCTACTTCATCTCAACACCCCCTTCCTCCTACCACAGTCCATCCTGGATGTCTTACCCCCCCGAGCCAGAGGACGTGCCCTCACAGTGGGCTGATTCAAACCAGTGTCATTTAGAAACCATTTGCTGAACTGAGTTTATCGCTGACGTTGAGTGGATGCAACAAAAGTCCCGGGGTGCCCTTGCCGGGCTATGCAGAAGCCTTCCCGCACCCACGTTACCCTCAAGGCAGCCCTCTACTGTGGAAGCACAGCCAGGCCATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211548 lncRNA upstream 2334 3960894 ~ 4005992 (+) True G156009
TU211520 lncRNA upstream 76169 3930833 ~ 3932157 (+) False LOC103025196
TU211515 lncRNA upstream 101131 3906994 ~ 3907195 (+) True G155985
TU211505 lncRNA upstream 159454 3848455 ~ 3848872 (+) True G155978
TU211503 lncRNA upstream 160709 3846849 ~ 3847617 (+) True G155976
TU211600 lncRNA downstream 65685 4188506 ~ 4188789 (+) True G156050
TU211610 lncRNA downstream 122430 4245251 ~ 4245521 (+) True G156060
TU211612 lncRNA downstream 125001 4247822 ~ 4248039 (+) True G156062
TU211616 lncRNA downstream 146684 4269505 ~ 4269708 (+) True G156066
TU211630 lncRNA downstream 246909 4369730 ~ 4370105 (+) True G156080
XM_022679498.1 mRNA upstream 8864 3977752 ~ 3999462 (+) True LOC103036562
XM_007232420.3 mRNA upstream 76163 3929331 ~ 3932163 (+) True LOC103025196
XM_015601072.2 mRNA upstream 109111 3858506 ~ 3899215 (+) True LOC103025504
XM_022679493.1 mRNA upstream 109111 3860658 ~ 3899215 (+) False LOC103025504
XM_022679492.1 mRNA upstream 393835 3611018 ~ 3614491 (+) True LOC111194753
XM_022679964.1 mRNA downstream 173498 4296319 ~ 4510540 (+) True LOC103029469
XM_022679965.1 mRNA downstream 452847 4575668 ~ 4633700 (+) False LOC103030011
XM_022679967.1 mRNA downstream 555382 4678203 ~ 4738405 (+) True LOC103037478
XM_007243993.2 mRNA downstream 793407 4916228 ~ 4920871 (+) True LOC103030327
XM_007244015.3 mRNA downstream 1398865 5521686 ~ 5524043 (+) True LOC103036856
TU211262 other upstream 1253214 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 2738947 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 2740131 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 2740131 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 2793663 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 1034333 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 3249555 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 3264681 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 3477746 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 4447109 8569930 ~ 8570877 (+) True G157055

Expression Profile