RNA id: XM_022679500.1


Basic Information

Item Value
RNA id XM_022679500.1
length 1866
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC103034771
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 5639248 ~ 5641113 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCTAAAAAAGACACAGGCTCTGGGTCCAGTCCTGGCTCCACTCTGAGGAGTCCAGTTCAGGTTTTTGCTGCTACCTGGTGCCAACGTGACTGCCGGCACGAGCCCGTGTTCTCGTGTTCTCTGTGAGGGATGATGATGCGCAGGTAGGAAGGAGGGAAACCCGGCAGTTCTCCTGCAGCAGTGTGGACATCAGCGGAGTGAGTGGGGGCTGCGTTAGGAGGAGGGGGCGTGTCTCTTAAGACCGGGGGGCTGAAACCATAGACTATAGcagcagcacagagagagagaggcagcaggGAACAGACACGACCTccctcatcctcatcatcatcctcatcatcaggCACGAGCATGTAACCGGCTCTTTCTCACGCACGCTCTCTCTCCCTTATAATAAGCGTTGTTTTATATGGAAGCCGAGTCCGCGTGCGCTGCCGCGGTCATGCTCCCTCCTAAGAACTGCATCCCGAGGAACTACAGCTGTATAGCGGGTCTGTTCGGCAGTCTGGCCACCACGCAAAAGATGGAGGAGGACGGGGAAAAGGCCGAgggcgaggaggaggaggtgacgGTCAACGGTGAGTGTCATCCGCCGGAGATCCGCGTGGTGGATGAGCGGCCACGGGGGCGCGAATCGTTCCTGAAGCCACCGCCGCAGAGCCCCACGCAGCGGCGGCGCTGCAAGTCCCTGCCGAGCCCCGCGGAGCGCGCCCGGCTGGAGATTGCTCGCAGCCGGAGCCCCACCAGCCAGAAGAAGGTGAGGTTCGCCGACTCGCTGGGCCTGGAGCTCATCTCCGTAAAGCACTTCGACGACGCCGACGAGCCGGAGATCCCCGAGCGCGTGACGGACCGGTTCAGGAAAGCGCGCGCCATGCACCTCAACACCCTGGGGGTGCCCGGAGCCTCGGCGCAGTCTGTCTTTATGGAGGTGCTGTTCAGCAACCCGTGTGCCTCGCCATCCTTCATGCAGCGCGTGAGGGATCTCCGCGTGTCGCTGGAGAGGGTGGACGCCGACGAGTTCTGCCTGTCCGGGCTCGTGCGCGTCTTGAACATGGCCTTCGAGAAGAGCGTGACGCTGCGCTACACCATCAACAACTGGGCCACCTTCGTGGACGCGCCGGCCTCCTACGTGCCGGAGTCGAGCGACGGCATCACGGACAAGTTCTGCTTCAAGATCGTCACCCCCATGTTCCTGGAGGCCGGCGGCACCTTGCAGTTTGCCGTCAAGTACCGCGTGGACGGGCAGGAGTTTTGGGACAACAACGGGGGAAGCAATTACAGAGTCAAGCGCCACAGGTTCAAAATCTCGCCCCCCCGCGAGTGGGAGAATGGTTGGATccatttcatttagttttttttatttcattcacacacacacagttttacgCACTCGCGTGTCTGTCTGTGCGCCGGTTCCTCACAGCTGCACTGAGCTGCTCCTTGTGGACTATGGCTTTTACGCTTTTGGAGAGGCGATGGGGGGATGGGTTGGTGCTAGACTGCACTGCTTTAGCTGCAGTAGAAGGAAGGGTTTGGTGCTGATTGATGGTGTCTGCTTGCTGGATAcagaagataaagataaagtgtGAGGTGgtgatggtgttttttttctttggtttttgCTCTTATGTAACATGGATGGAAACACGTGCCACGAGATAAACTGAAGCTGTACCCTTTATGCATGACTTCAGTCAAAGATGGTGATTCTGTacatagagagtgagagagagagtctatatatgtatatatagatataagtatatgtgtgtgagtgtatgtgtgtatgtacataATCTTATACAAAGGTTTGGGCATCCCTGGGGAATCGCACATTTTAAACCCAATTTCAATTACTTACTGAA

Function

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211802 lncRNA upstream 27975 5602332 ~ 5611273 (+) True G156225
TU211788 lncRNA upstream 37589 5601105 ~ 5601659 (+) True G156215
TU211781 lncRNA upstream 154203 5484764 ~ 5485045 (+) True G156209
TU211776 lncRNA upstream 197249 5441738 ~ 5441999 (+) True G156204
TU211774 lncRNA upstream 312277 5326762 ~ 5326971 (+) True G156202
TU211812 lncRNA downstream 4768 5645881 ~ 5648574 (+) True G156233
TU211922 lncRNA downstream 409367 6050480 ~ 6052382 (+) True G156331
TU211916 lncRNA downstream 415556 6056669 ~ 6061997 (+) True G156326
TU211931 lncRNA downstream 476032 6117145 ~ 6117589 (+) True G156340
TU212013 lncRNA downstream 665612 6306725 ~ 6307420 (+) True G156395
XM_007244010.3 mRNA upstream 9058 5621220 ~ 5630190 (+) True atmin
XM_007244011.2 mRNA upstream 19957 5612961 ~ 5619291 (+) True cenpn
XM_007244014.3 mRNA upstream 41460 5536734 ~ 5597788 (+) True cdyl2
XM_007244015.3 mRNA upstream 115205 5521686 ~ 5524043 (+) True LOC103036856
XM_007243993.2 mRNA upstream 718377 4916228 ~ 4920871 (+) True LOC103030327
XM_007244000.3 mRNA downstream 61983 5703096 ~ 6042503 (+) True gse1
XM_015604469.2 mRNA downstream 61983 5703096 ~ 6042503 (+) False gse1
XM_007244001.3 mRNA downstream 62009 5703122 ~ 6042503 (+) False gse1
XM_007243996.3 mRNA downstream 422139 6063252 ~ 6065533 (+) True LOC103031281
XM_007243995.3 mRNA downstream 426102 6067215 ~ 6095668 (+) True LOC103030962
TU211750 other upstream 481848 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 2884136 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 4369869 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 1731263 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 1746389 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 1959454 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 2928817 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 4299716 9940829 ~ 9941805 (+) True G157383

Expression Profile