RNA id: XM_022679507.1


Basic Information

Item Value
RNA id XM_022679507.1
length 1745
RNA type mRNA
GC content 0.46
exon number 11
gene id gas8
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6482819 ~ 6488287 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAACTGGTTTCCATGGATCTGGTTTGTTGTTTGCAGACCATCAGCACAGGAGAGCTGTAGCTAAACTATCTAAAGCTAAATCACGAGAATATCTGTACAGTTTCTCTGCAGAAACACCCGAATACACACTGCCCTCATCTGACTGACCAGTACTAGctacattacacacatacagcatGCCTCCAAAAAAGAAAGGAGGGAAGACTGCGAAGGGCAAGAAGAGCCCTACAGTGGTGGATGGACTTTCCACAGAGGAAATGTCGAAGGAGCAGTTGGAGGACCACATTGTCCGCTTGCGTGAAGAGCTGGACAGGGAGAGGGAAGAGCGCAACTACTTCCAACTGGAACGAGATAAGATCCACACCTTCTGGGAGATCACCAAAAGACAGCTGGAGGAAAAGAAAGCAGATCTCAGGAACAGGGATCGGGAAATGGAAGAGGCTGAGGAACGCCATCAAGTTGAGATCAAGGTGTACAAACAGAAGGTGAAACACTTGCTGTatgaacagcagaacagcatcGCAGAGCTCAAGACAGAGGGAGTGGTCACCACCAAACTGCTGCAGAAGGAACATGCAGACCTGGAGAATGATCTGCGGAAGGGCATTCGGAATCTAAAAGTGGATATCAAGGAACAGGAGCTTTCCAGTGAAAATCTGATCAAGAGTCTTAAACTGAAACATGATGAGGAAATTACCAAGATCAGGAATGATTTTGAACGACAAGTACGAGAAATAGAGGCTAAATATGAAAAGAAAATGCTGGCTCTGCGCCAGGAGCAGGATCTCAGACGCAAGACTGAAATCGAGGAAATAGAAGAAAGGAAGAACTGCCACATTAACACACTGATACAAAACCATGAGAAAGCTTTCAGTGACATTAAGACCTATTACAATGATATCACTTCCAACAACCTAGCCCTCATCAGTACACTCAAGgagaatgagagagaaatgaagaataaagaaaagagGTTGGAGAAAGAGATGGCAAAGGTGCTGCGGGAGAACAAGCAGCTGACCGAGCCTCTGCAGAAGGCCACTGAGGAAGCCACAGAACTCCGGAAACAGCTGGCCAATTACAATAAAGACAAAAACTCACTAGCGGGAGCCAGAGTTCGAATCAAGGTggcagagaaagaaataaaggaccTGAAATGGGAACATGAAGTATTGGAGCAAAGGTTCAGTAAGGTGCAGCAGGAGCGTGATGAACTGTACCAGAAGTTCACCAAGGCCATCCAGGAGGTGCAGCAGAAGAGCGGCTTTAAGAACCTTCTCCTGGAGAGGAAGCTAGCTGCTCTTACAGACTCCCTGGAGAAGAAAGAGGCTCAGCTCAATGAGGTTCTTGCTGCCTCAAATTTAGACCCCACAGCCCTCAACGTGGTTACTCGCAAGATTGAGGAAGTGATGGACTCTAAAAACATTGCTATTAAGGATCTACAGTATGAACTTGCTCGTGTCTGTAAGGCTCATAATGATCTGTTAAGGTCTTGCGAGTCGAAGCTGAAAGTGTTTGGAATCCCTGTGGAAGAATTAGGATTTAAACCCATGGAGATCAGCATTGCGGGACAGACTCTGGGACAGGGTCCAGCAGGCCTGGTATCTGCACCTCTCTGACAAAACGCCCTACAGACCATTGAACTCTAATCACATACACTTTCACCTCTTTACCTGGAGTGCCTTagatctgtttatttatttcatgcctgtcaaataaaaattatgataatgcattttaaaa

Function

GO:

id name namespace
GO:0055001 muscle cell development biological_process
GO:0048870 cell motility biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0031514 motile cilium cellular_component

KEGG:

id description
K19942 GAS8; growth arrest-specific protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212071 lncRNA upstream 41542 6441051 ~ 6441277 (+) True G156438
TU212066 lncRNA upstream 49957 6432397 ~ 6432862 (+) True G156436
TU212069 lncRNA upstream 49993 6432397 ~ 6432826 (+) False G156436
TU212065 lncRNA upstream 52193 6430023 ~ 6430626 (+) True G156435
TU212064 lncRNA upstream 54526 6428064 ~ 6428293 (+) True G156434
TU212086 lncRNA downstream 11564 6499851 ~ 6501174 (+) True G156451
TU212165 lncRNA downstream 182634 6670921 ~ 6671194 (+) True G156499
TU212190 lncRNA downstream 280655 6768942 ~ 6774732 (+) True G156523
TU212237 lncRNA downstream 379973 6868260 ~ 6869564 (+) True G156562
TU212321 lncRNA downstream 538311 7026598 ~ 7030708 (+) True G156623
XM_022679503.1 mRNA upstream 119670 6324821 ~ 6363149 (+) False dbndd1
XM_015604453.2 mRNA upstream 119670 6324824 ~ 6363149 (+) True dbndd1
XM_007244016.3 mRNA upstream 177247 6301848 ~ 6305572 (+) True foxf1
XM_007243994.3 mRNA upstream 371813 6100753 ~ 6111006 (+) True irf8
XM_007243995.3 mRNA upstream 387151 6067215 ~ 6095668 (+) True LOC103030962
XM_007244032.3 mRNA downstream 242883 6731170 ~ 6759468 (+) True LOC103042367
XM_007244034.3 mRNA downstream 320648 6808935 ~ 6817496 (+) True zdhhc7
XM_015604486.2 mRNA downstream 320880 6809167 ~ 6817496 (+) False zdhhc7
XM_007244039.3 mRNA downstream 335342 6823629 ~ 6828644 (+) True cog8
XM_007244036.3 mRNA downstream 350591 6838878 ~ 6858524 (+) True wdr59
TU211750 other upstream 1325419 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 3727707 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 5213440 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 884089 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 899215 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 1112280 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 2081643 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3452542 9940829 ~ 9941805 (+) True G157383

Expression Profile