RNA id: XM_022679528.1


Basic Information

Item Value
RNA id XM_022679528.1
length 4416
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC103040931
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7358284 ~ 7371895 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTGTCTTCCATAATAAAAGCCCCTGGGCGACGTGTCTGCTGGAGTGTTTTTAACACGGCTTTCTGCTGAACTCCTCCACGGAGCGTGAAGATTCTGGGCTctgtatgttttaaaacattttcagaaaaatgggagaaacgAGATTAGCTCGGCACATGTTCCTGTGGTGCCTATCTGCTGTCTACATGTTTGCCTTTGCTTCTGTTTACGTGCAGATTCCAGGTCTTTATGGTAATGAGGGTCTGCTGCCAGCTCGTTGGATGCTCAGAGTCTCTGGGAAGAGTGTATGGGAGCAGTTGACAGACTCTCCCACCTTACTGTGGTTTGGTCCCAGGCTTGGTCTCGACACCCAGCAGTGCATGGAGCTGCTGAGTCTGAGTGGAGCTCTGCTGAGCCTGGCAGCTACAGCTATCCCCACGCTCAGAGACTGCAGGGTCTACCTGGTGCTTTGGATGCTCTACCTGTCACTCTATCAGGTGGGACAGGTCTTCTTGTACTTCCAGTGggatAATCTGTTGTTGGAGGTGGGCTTTCTGGCCATCCTTGTTGCCCCCATGAACATGCCCTGGGGGTGGAGGTTGCATGCCCATGACAACATGACCTTCTGGCTGGTGCGCTGGCTGCTGTTTCGGCTGATGTTTGCTTCGGGTGTAGTGAAGCTGACCAGCCGTTGCCCCACCTGGTGGGGCCTCACAGCTGTGACCTATCACTATGAGACCCAGTGCATCCCCACACCTCTGGCCTGGTTTGCTCACCAGCTGCCAGTTTGGTTCCAGAAGCTTAGTGTGGTGGGCACGTACGTCATTGAGATCGGCGGCCCTTTCCTCTTCTTCAGCCCCATCCGCAGACACAGACTGACTGCCTTTTATATGCAGGTCTTACTACAGGTTTTGATTATCCTGTCAGGAAATTACAACTTCTTTAATCTGCTGACCATCGTACTGTGCTTTTCTTTACTGGACGACGAGCATGTAAACTTCTGGCTCTGCAGACGCACGCCACGGGAAGAACGAACATCCCTGCAGACCCTTCTGTCACGGTTTTGTTTGCTGGTTGAACTGGCTGTGTATGCACTGCTTGCCTACTGGACTTTCCTTTACTTTGACCTAAAAGTAGACTGGGACAAGAAAAGTGTCTCTTCTAAAACAGcTTTCACCCATTTTGAGTTTAATAGATTTTTGAAGTTGGTCACGGTTCCCAGTATTTGGATTGGGGTTCTCTCTCTTACCTGGGAGATTGTCACTGCCAAATTCAAaAGTGCGTGTTTAAAGGGTGTATTCTGGCGCCTGTGGAGCACTGTGCATTGGGCAGTCTTTGCTGTAGCCACAGCCTCAATGTTTGCCATTAGTTTGGTTCCCTACACCTTCATAGAGTATGAGGCTAACAGTAATATCTGGCCTGGAGTGCGCAAAGCATATGAGCAGTCTGATCGGTACCAGCTGGTTAACTCTTATGGTCTGTTCCGGAGGATGACTGGAGTCGGGGGCCGACCTGAGGTGGTCATCGAGGGCAGTATGGATGGCAGCACTTGGATAGAGATAGAGTTCATGTATAAACCAGGGAATGTTAGTAGAGCACCTCCAGTTGTGACCCCACACCAGCCTAGACTGGACTGGCAGATGTGGTTTGCAGCCCTGGGACCCCAGACCCAGagcccctggttcagcagcctCGTACACAGACTCCTGCAGGGCAAGAGAGATGTGATCAAACTCATTCAGACAGATGAGTCTCAGTACCCGTTCAGCCAGCAGCCTCCAGTATACGTCCGTGCTCACCGTTACAAATACTGGTTTACTGCACCCAAAGAGGACGGGTCGTTTCCACAGAGGTGGTGGAGGAGAGTCTATGTAGAGGAGTTTTACCCTGCTGTTCACCTGGGTAATGCTTTTCTGGAGCACATGCTTGCCCAGCATGGTCTGAAGgaTAAGCCTCCTGTGCGGCAAGCTTCAGAGACCTGGCTTCCGCGCACGTTGAAGTTTGTTGGTGATCATGTGCGGGATGTTCCTGCTCCACTGCTGCTGTGGACACTCTTCAGTTCAGCTGCTACGGTCTGTCTCGTCAACACCCTCTGCTCACGCACTCGCCCTCCACAGCACTCACACTGCCGCCCTGCCCAACCCACTTCAGAGCAGATGgcaaagaaagagaaggaggagagaaaagtggagaagaagaataagaatatgaatataaaagaggaggaagatgaagaagaagatgcAGAGGGAGAAGATGAGAAGGACAAGACTAAGGAAATGGTTGAAGAAAAGGGGAAGGATGATGATGCTACTAATGAGGAAGACGTAGATGTGAGTGAAGAAAATGAGGAAGATGAtaatgatgaagatgaagaacaAACCTCAGAAGAGAAAGATCATGTTAGGAAAAGGAAATGAACTTGGGCTAATCAGGATAATCAACTCTGCAAGAGGAGAATCTGAGAGGTCCAGCTGAGACTGCTGAAACTGTCCCCTCCCCTGCTAACACCAGCACTTATTAATATTTATCTCTTTTAGTAATACAGGAATACAACAGCTGTGCATTATTCGTGGAGTAGAGTTTCCCAGTGATGCTTAACTTGAGTTAAAATGAATAATCTCCTGTTAGAACAGCTAACTCTAAAATTCAGGTGCCAACTCTAGTGTTAGATGCTCGTTATCTGCTTTTCCTGCTTAAACACACCTGACTCAAGTTTCCTGTTAATTATCAGATTTATAGTCGACCTATTTGAACAGGAAAATCAGCAAAATATGCTTCACTTCCACCCACATTGCCCACACCTGCTGTAGACCAACCAGGTTGGGTAGATAAAATAAGTTTGATTGATATCTCCATTTATTATCactttatttatactgtattgtcCTTTTTATATTAACTCATCAGTGATTCCTAAGCTTAGTCAGTTTATGGtaaaactgtatatttaagTGGTTTCCTGCTTAAAAACACACCCCACTTCAACAGAATGAAGATCAGTGTAAATCAGTGTAAATGCATTGATTTAGCTGGATCAGGTTTGGTTTGTTAGAAGGGGGTCAGAGAGGTACAGGACCAGGAATGTGAACCCCTGGTCATGGATGATGGACTAGGAGTTTTGCTAAATAAGGCCATATAAACAAACTAATCAATACACTACATCAGAAAGTTTTCACACAGGCTTTTGCTGTCCTTTAAATCTAACATTAATTTAAGGTAAATATTTAAGCCCCTACTGCCTGagcatttattaaatattgaacAGGGAATGTTGCACTAGTCACTGTCTTTCCAAAGGTTATTAGACTTGTTTAAGGTGATGTAAATAATTttggtgcatgtgtgtgtgcaaggggaaaaaaaatgctgcttatAGAACATGTAGTTTCACACTGTGTGAGACTTCTCTGCTTTTGACCATGTCACTgactttttatttaacatatacaTGCGCACACTGTGTATCTTAGGCTATGTTCAGATTGCagatgaaacagaaaaaaaaaacatttatttatcaaaataaTGGGAGAATTCTTTTTCGGGATGGTGAGATTGAGTTAAGACTATGCACACTGTTATTTGCAAgcgatcagatcagatttgtgtcTGTACAttacaatctagatatgccaaaacATGTCTTTTGGGCTGAAAATCTGAACATGGCTGTATGCACCTAAAAATAAGGATACTACAGGTGATGCCAtagaagtactaaatatattttcagaGAAGACTCACTGACCTGATCTGATACAGAAAGGGTTCTTTCTGGAATCAAAGAAGATCCTTGGACTGAATCATAAAAAATACCAATTGTAGCAGCTTTTCTTTTAGGATTCTATGTAGGGTCATTTTATTACCTCCAGTGGAATTGGGGCAGAACCcataaatgtaaagaatttttAATTCTGTCTTTCCAGGGCCGGCCAGCCTTTGTAGCATTTGCCTCCTGCCTTATGATTATAAACATTTCAGTATTATCAACTTCCATCAGGGTTCTGAATGATTATGAGAACAGTCAGTTGAATATCCTGCAGCGAAACACCTGAATAGGCTGTGTACTAGAGGTTCACAGACATTCCTGacactaaaaaaacatattattctGACTGGTcagaatgtttaaaatggaaatggAAGCTTGGGAATCTTCCAGAACCTTGCTGATTTGTATATGTTTGCTGAAAGTTATAATTCACACTGCCTTTCAATCAAGCTGGTCACTGTTTATCTGCTAGACTCAATGTTCATGCTGTGGTGtgttttgtctgtattgtgtgtatatctgtTGATATTCCCCTTCTTTTTCTAAAGTTTGCACTTCTTTCCTGTTTGCCTTTTTTCCTCAGCCTTGTAATCttttaaaagaaacacattttgtatcatttataaaaaaaaaacataaaataaaaaagctattatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212428 lncRNA upstream 112595 7245764 ~ 7248460 (+) True G156697
TU212379 lncRNA upstream 189430 7168208 ~ 7171625 (+) False ptprq
TU212321 lncRNA upstream 330347 7026598 ~ 7030708 (+) True G156623
TU212237 lncRNA upstream 491491 6868260 ~ 6869564 (+) True G156562
TU212190 lncRNA upstream 586323 6768942 ~ 6774732 (+) True G156523
XR_002651235.1 lncRNA downstream 17211 7389106 ~ 7398357 (+) False LOC111194759
XR_002651234.1 lncRNA downstream 17211 7389106 ~ 7398357 (+) False LOC111194759
XR_002651231.1 lncRNA downstream 17211 7389106 ~ 7398357 (+) False LOC111194759
XR_002651232.1 lncRNA downstream 17211 7389106 ~ 7398357 (+) False LOC111194759
XR_002651233.1 lncRNA downstream 17211 7389106 ~ 7398357 (+) False LOC111194759
XM_022679524.1 mRNA upstream 2863 7324500 ~ 7358192 (+) False c2cd5
XM_007244067.3 mRNA downstream 74248 7446143 ~ 7454434 (+) True LOC103026191
XM_015604457.2 mRNA downstream 153230 7525125 ~ 7540255 (+) True LOC103026791
XM_015604459.2 mRNA downstream 153230 7525125 ~ 7540255 (+) False LOC103026791
XM_007244072.3 mRNA downstream 200256 7572151 ~ 7581205 (+) True LOC103028022
XM_022679539.1 mRNA downstream 242064 7613959 ~ 7655049 (+) True vwf
TU211750 other upstream 2203655 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 4605943 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 6091676 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 481 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 15607 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 228672 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 1198035 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2568934 9940829 ~ 9941805 (+) True G157383

Expression Profile