RNA id: XM_022679547.1


Basic Information

Item Value
RNA id XM_022679547.1
length 1968
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC107197496
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7824010 ~ 7828562 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGTGGCTCTGGTACGTGGCAGCACGCAGGCGCCGAGTTACCGGCTTCAGACCTGAGGAGCAGCGTTACTGTCGGAGGAGCCGCAGTCTGAAGAACCGAGCTACCGACCTCCACCTACAGCCACTGCCTGATTCACCATGGGGCTGACCATTTCCTCACTGTTTGGGAGGCTTTTCGGAAAGAAGCAGATGAGAATACTGATGGTGGGTTTGGATGCAGCAGGTAAAACCACCATTCTCTACAAGTTGAAGCTTGGGGAAATTGTGACGACAATTCCTACCATAGGTTTTAATGTGGAGACTGTAGAGTATAAGAACATCTGCTTCACTGTTTGGGATGTCGGTGGTCAGGATAAAATTCGCCCACTGTGGAGACACTACTTTCAAAACACTCAGGGCCTGATCTTCGTAGTGGACAGTAATGACCGAGAGAGAGTAGCTGAGTCGGCTGAGGAGCTTGCTAAAATGCTGCAAGAAGATGAGCTGAGGGATGCTGTGCTGCTTGTGTTTGCAAACAAACAGGATCTGCCTAATGCCATGGCAGTGAGCGAACTTACAGACAAACTGGGGCTGCAGAGTCTGCGAAGCAGAACGTGGTATGTTCAGGCTACCTGCGCTACACAAGGCACCGGGCTGTATGAAGGACTAGACTGGTTATCCAATGAGCTGTCCAAACGCTAGTGCCTGTGAACGGAAGATAAAAGGGGTGACTGAATTTGAGGAAGAAAGATAACATTAATCTATAGACTCTGTtctaaagagtgtgtgtgagtgtgggtggatgaatgagtgagtgttgGGGCTGATGGGTGATGAGGAGCCAACCGTTATCATGTCTTATCTTTACTTTTCTATTCTTTATTCTGGCTCTgttcttacttttcttttgaGACACATTGTTTTATATGGATTATGCTTTAAATTGCATGTTCACTTAATAACTGTGACAGCATTATGGAAGCAGCAGGGCTTCAGAATGGAAATATTCTGAAGAAAGGACCTTTCCCTACACCAGCGTTGGGCAGTTGTAGTCCTGGAGGCCCGGATTCCTTTACAGTTTTGTGCTTTTCCTGCTTGAGCAGACCTGATTCAACTCAACTGTTAATTGCCAGGTTTACTAGATCTATTAATGCAGGGAAATCAGcaagcagtgttgtactctgtcgCCCACCCCTGCCTTAGATGgttctttataaataaaactgagCCACCTAAGCCCCATCTGAGATTCCACAGATTTGTGCTTCATGTGCTAACTTACTGCTTGTTGTACAACTTTGTTTCCTACagacattaaaatattacattaaacaaTGTTGTaatttagtctctctctctcagctacTTCACTCTGAGGCAGACTCATTCAGCCTTAACTCTGCAAATGTTCTTGATATACCTGCATTACATATTTTCTGATATTTACAGTGATAAATCATGCACTCAGGATTTTAAGGAAGCTACCCATTACTGTTTAACCGGAACTAGCCCCCTCATCTAAGTCAATGTTGGATCCAGAGCTACAGTCATACAGGGTAGAAAACTGGAAACATAACTAGTGAGGAACAGGCACCAAATGTTTGACCAGGAAAGAGATGGAAGCACcttctttacatatttattgCAGCATGCTCCTGCCTTCCACACTGTTGCCTGTATAGGTATTTGGCTGTGAATCTCACACAGTGCAATAAGGTTCCTCTTACCTGTGGTTTACTCTCTTTCTGAAGTGGTGCACATTTGAGCAAACAGAAAGGTGACAAATATAGTCACAAACATTACTGAAGAGGGACAGGCAATGGAAATGCAataataacagtgtgtgtgatgtgttatTGTCTTGTTTTCTCATTGTGTTTGATTCAAATGCTAGCTCAATACTGGAAAATGCcctgtgttttatatgtgttgTATGAAGTTTCACTTGCCCtgcttttcttaaataaaagtttCCTGAAGATTACAAATA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07939 ARF4; ADP-ribosylation factor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212683 lncRNA upstream 68346 7752203 ~ 7755664 (+) True G156856
TU212684 lncRNA upstream 68346 7752332 ~ 7755664 (+) False G156856
TU212636 lncRNA upstream 265053 7553653 ~ 7558957 (+) True G156824
TU212487 lncRNA upstream 393429 7426825 ~ 7430581 (+) True LOC111194759
XR_002651233.1 lncRNA upstream 425653 7389106 ~ 7398357 (+) False LOC111194759
TU212767 lncRNA downstream 8193 7836755 ~ 7844894 (+) False G156916
TU212769 lncRNA downstream 8193 7836755 ~ 7841481 (+) True G156916
TU212771 lncRNA downstream 8193 7836755 ~ 7837772 (+) False G156916
TU212776 lncRNA downstream 8193 7836755 ~ 7844894 (+) False G156916
TU212779 lncRNA downstream 8193 7836755 ~ 7844894 (+) False G156916
XM_007244092.3 mRNA upstream 26001 7783636 ~ 7798009 (+) True LOC103034665
XM_022679545.1 mRNA upstream 53707 7755742 ~ 7770303 (+) True terb1
XM_007244081.3 mRNA upstream 97060 7720499 ~ 7726950 (+) True LOC103030643
XM_007244079.3 mRNA upstream 105296 7712763 ~ 7718714 (+) True LOC103030109
XM_007244080.3 mRNA upstream 105296 7712763 ~ 7718714 (+) False LOC103030109
XM_007244089.3 mRNA downstream 1540 7830102 ~ 7835726 (+) True LOC103033491
XM_015604460.2 mRNA downstream 23363 7851925 ~ 7860510 (+) True LOC103032733
XM_007244087.3 mRNA downstream 33510 7862072 ~ 7866578 (+) True odf3b
XM_022679549.1 mRNA downstream 46462 7875024 ~ 7880960 (+) True rabl2b
XM_022679551.1 mRNA downstream 462600 8291162 ~ 8301780 (+) True LOC103028908
TU212659 other upstream 217342 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 392442 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 419454 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 2666610 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 5068898 2738361 ~ 2755112 (+) True G155776
TU212948 other downstream 741368 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2112267 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 4533889 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 4907070 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 5905383 13733945 ~ 13736102 (+) True LOC107197649

Expression Profile