RNA id: XM_022679551.1


Basic Information

Item Value
RNA id XM_022679551.1
length 4098
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC103028908
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8291162 ~ 8301780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGCTCATTTAACCTGTGCTCATCCAGACTTCACCTCTTTAACCTGCCTCTGAGGATTCTGAGGAAATCTTAGTTTTTCCTTCACCAACAATCAGAACCACCAGAACCATCCAGAACAGCCGATCCAGGATAATGAAATGGCGCAGAAATTAGATCTCACTGAGAAGGAACTTTCCTGTCATCTCTGCTGCCATATCTACGAGGATCCTGTGCTGCTGCCTTGTCATCACAGCTTCTGTCAAGAATGCCTGCAGGAGTACCGGGAAAGCAAGAAAACGCTCAAATGCCCCGTGTGCAAGAAACCAGCTCCCAAAGGTTTACCTCCAGCTAACCTGCAACTGCAGGCAATGTGTGACAGATTCCGTCAGGAGAGAAGGAGATCAGCAGAGAGGCACGAGACTCTCTGTGACCTGCACAAGGAGAAACTCAAGCTCTTCTGCCTGGAGGATAAGGAGCCGGTTTGCGTCGTGTGCAAGGAGATGAAACTGCACAGCACACACAACTTCAGACCACTGGATGAAGCAGCAACGGAATACAGGGTGATGCTCCGCTCTAAACTGAAGCCCTTGCAGGAGAagcttaattcatttttaaaagctaAACTGATTTGTGATCAGACGGCGCAGCACATTaagAGCCAGGCCCAGCAAACAGAGAGACACATTAAAGAAGAGTTCCAGAAACTTCACCAGTTTCTacgagaagaagaaaaagacagtttgtctgcactgaaggaggaggaggaggtgaaaAGCCAAAAGACACGGAACACCATCAGTAGAATAAACGACCAAATCCTCCACCTGTCCCAAATAATCACATCTACATATGAAGAATTATCATCTGAGGACACAGCTTTTCTTCAGAAATACAAAGAAATTGATGACAGAACTGACTATGATGTACAAGATCCAGAGATCCTGTCTGAAGTTCTGATTGATACGGCAAAGCACCTGGGCAATCTGAAGTTCAGAGTATGGGAGAAGATGAAGGATATGATCACTTACACTCCTGTGATCTTAGACTCCAACACTGCCCACCGGCGTCTCGCCCTCTCCAATGACCTCACCAGCTTTGTGTGTCAAGATGAGCACAGACAGATTCCCGAAAACCCAGAGAGGTTTGACCATCATCTGTGGGTCCTCGGCTCTGAGGGCTTCAGCTCAGGATCACACTACTGGGATGTTGAGGTGGAAAACTGTAAAGAGTGGGCTCTGGGGGTTGTAACGGGTGCTATGCAGAAGGGTAAGACATTCTTCAGTGGGATATGGAAATGCCATTACGAGAACATTTTGTATGGGGCTAGTTCCACTGGAGGACCCACCGACATCCTCAAAGTGAGGGGGAGCTTACGGAAGATCAGAGTGCAGCTGGACTGGGATGAAGGAAAAGTCTTGTTTTATAACCTCAACAATGGACGACCTTTACAGACTTTTTCACACAAGTTTACAGCACCGGTCTTCCCTTACTTCTGTAACCAGTGTAAAACGTATCCACTGAGGATTTTGCCAAAGGAGATCTCTATAGCTGTACCACAGGAGTGTAGCGCACATGAACTAGCTTTTCTGGCTACATACTCTACTGCTTAGACTTACAGGTCTATGCCTACTTCAATTCCGTGTGGATTCCCTAAACTTTGAAAAGGTTATCGTATTTAcataaatttgtattttaaaggaCCAATGTGTAATTATATTTGCTGTACTAACTCTTTTCTTTAACTATGtgtttctactgtccagggaaaaGCTTTCTACTAGGTTTTTGCATTAgtgcattagtgaggtcaggatttgGATCATTACCAACCCACCCAATCATCCCCAGTCTTCTAACTCATCAAAAAAGTCAGATAGAGTGCCAGCATGATAGTGCCAGAGAATGCAGCTCAATTCCTTTGTAACCCCTCAAAACCCATGTTTGGCTCTAGGCTTGGTTCCAATAGGTGCAATGTTGtctgtttatctgctctagaAAGTCTTAGGGCCCTTTTGTGCACTATGCCCAAGGCACgctgcgatgctcattgctatcttacaccccgtcaacagtctaatTTCACGCCTTTCATccgcaccattaaaatagcttcAGAGTTTAGGACTATATTTACGCCAaagggtgtggtggtctggaagcgaggtgtgttcaggtaaatatctggcgtgtttctatcttatCGGCGGGAAATACCGGTGCGCCactaactgattaaaaccctgacaacaatcaaCAGTCAGCCGTGCAAAAGCACCACTGCTAAGCAATCAATGTGCCAAACCCAAAGTAcaactggctcttaaaggtaatgacaagtggcacactgattggtttatttcaaatTTCAAGCTCAAAATATTCCCATGATTAttgagagaattagtacatgccttttgcatgtttcgagcCGTGCAAGGTGTAAGACACACCAAcgcatgccctaaatcaagctgcgtgaTGCACAATTGACCGGTGCAGTATAGATCACATAAATAAGGCCCTTAGTGTTTTAGTGAATGCATATGTgcgtgcatttgcacatctgagACAGCCATAGGGGCTCCTTAAAGTAGGTAAATGCATTTGTAACAACTGATCTCTCCACACATTTGTACAGTATAGCGTATAGTGTATATTAAGAGAGCTAGGCCTCGTGGCTGATAGCAGATTTGCCAGGTTTGTGCCTCTTGAACACAACAAAATAGTATAACAACATTGAACTCAAGAACTGACAATTCTTACATAAAAAACTACAATAATCTTGTTactatgctaaaaaaaattaggctatactatgctatacaaATCAGTGCCTCTTAGTAAACTGGCCAATCAGAGCAAGCTTATTAAATgattcacttttatttattcaccATAACAGgaaaataacagggttgtacTGTAAATTGGAGGGTAAAATgacatttgaacatttttacACCACACCAAAGCCACAAACGTACTATTAATATGTCATATAGAAGTTTAAAATgctgaataaatatattctatGGTATATTTAAAAGTGAGAATCAGATATTACTCACACTACACATTACGGTAGCTGTGATGGTGgctggcatttaaaaaaaaaacagttatttacagttatttatttcattcatgAGCTGTCGTCATGTGTCAGGAACGGTATATTAACACTGAGCACTGTATGGCATTTTCTGTCAGTGAATGACATTAAACGTGTGGCATTTACCTGCCGTTCTGCCTTTTGTAACGCTGCTGCTTTGTGTTTACTATATTCCATTTTATTTCAGAGTAAAATACATGTTAGACATGGAAGTAAAAAGCTTTCACAATTCTATTTCCACTATATTTTTGAACATACAGGTTTAGTCACTATATCAGGCATGTTTCTTGCATTGTCGAGCTCTAATACTGTCACATCACAGCAACAAAGCAGCTTGTCAGGTACGGTACTGAAGACCTGAATAAaatgacagcagcagcagcactgtagAGCCTGATGAAAAGGATACTCATATCGATCTCCATTCAGAcggagagattgagagagagactaGGAATACCACATGGGGATCAGCATCAGGCCAGATAGACTTTCCAGATGCAGTCagtttctttttattcattCTGTCACTCAGTCATGCTTTTTCTCTCACTACAGTAGCCATTATTACAATATACAGCTGTTGTAGCATGAATAATAACAGTGTAGTTAACAGGTTATTAATTATCTATTGAATAATAGAGGGATTAAAAGactttttttgcagaaatttatgtatgtatgtgcagaaaatgtgcTGAAACTGGAAATGTAATCAGTGTGCATGCCAATTTTCTTCCATTTAGTGGAATGTTAAAAGGATTACCCACTTTGTTCATGCCGGTACAAATTATATTCAGATTCGTAGTAcacataaacatgttttattctgatttagcTATTAGTCAGATTATTTACAGATTATTAGACTGCATGTAAACATGGATACTGATGTTTGCTTATGGAAGCTGATCGATCAAGAATATGGGTGCAGTGGACACTTTTAGGTACTGGTTGATTGGAAATCTTGTAGACATTGAAGGTTCTCCACACTCACAGATCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212774 lncRNA upstream 353132 7841684 ~ 7938030 (+) False G156916
TU212775 lncRNA upstream 353132 7841684 ~ 7938030 (+) False G156916
TU212773 lncRNA upstream 392573 7838566 ~ 7898589 (+) False G156916
TU212780 lncRNA upstream 430522 7846615 ~ 7860640 (+) True G156917
XR_001518589.2 lncRNA upstream 441284 7846483 ~ 7849878 (+) True LOC107197493
TU212909 lncRNA downstream 54438 8356218 ~ 8357077 (+) True G157019
TU212912 lncRNA downstream 59740 8361520 ~ 8361750 (+) True G157022
TU212918 lncRNA downstream 130834 8432614 ~ 8438269 (+) True G157027
TU212945 lncRNA downstream 264649 8566429 ~ 8567668 (+) True G157052
TU212947 lncRNA downstream 266464 8568244 ~ 8568463 (+) True G157054
XM_022679549.1 mRNA upstream 410202 7875024 ~ 7880960 (+) True rabl2b
XM_007244087.3 mRNA upstream 424584 7862072 ~ 7866578 (+) True odf3b
XM_015604460.2 mRNA upstream 430652 7851925 ~ 7860510 (+) True LOC103032733
XM_007244089.3 mRNA upstream 455436 7830102 ~ 7835726 (+) True LOC103033491
XM_022679547.1 mRNA upstream 462600 7824010 ~ 7828562 (+) True LOC107197496
XM_007233848.3 mRNA downstream 121886 8423666 ~ 8432053 (+) True arsa
XM_007233845.3 mRNA downstream 165093 8466873 ~ 8474471 (+) True pgc
XM_022679552.1 mRNA downstream 193060 8494840 ~ 8507495 (+) True chkb
XM_007233841.3 mRNA downstream 193061 8494841 ~ 8507495 (+) False chkb
XM_022679553.1 mRNA downstream 206624 8508404 ~ 8513431 (+) True LOC103026556
TU212659 other upstream 684494 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 859594 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 886606 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 3133762 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 5536050 2738361 ~ 2755112 (+) True G155776
TU212948 other downstream 268150 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 1639049 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 4060671 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 4433852 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 5432165 13733945 ~ 13736102 (+) True LOC107197649

Expression Profile