RNA id: XM_022679569.1


Basic Information

Item Value
RNA id XM_022679569.1
length 2236
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC111194761
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8820102 ~ 8826458 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGGGGTCCCATTACCGAGCCATGGGGAACCCCAGGAACAGTGTTCTTTGGTATAAGGATGCTTCATCCAATACAAAAAGAAGTGATTATTCACTTGCAGCTTAATATGTAGATCTCACCCTGTGTTGCATGGCATTGTATTAGTATTAATTCTATAATCAATACCAACACAGACactcatcactagtgattacTGGTGGTTTAAATGTTCTGGTTGTTCGGGGTATATTGtgtgcactggaaaaaaatgtgaCCCAGTGTTTTCCTGAAGACACTCTATGCGCTAATACAGAGCTGTTGTGCCCTCTAGTGGATAACCATGCTCTTACCATTCTTCTCTGCATTCTTCACAGTTTTGAAGGAGAGACGTTGCGCAACAGGAGAACAAACAATCTGAACTTCCTTGTTATTAGTAAGTTTCGTTTCTGAGGAAGCAGAAGCTGCCGTTCAAGCTGGAGCAGAGATCATGGCAGGCAAATCGTTCTCTGATGAAGACTTTGCTTGTCCTGTATGCTATGAGATCTTCACTGAGCCTGTAGTTCTGCTGTGCTCTCACACCATTTGTAAAGCATGTCTGACTCATTCCTGGGAGGAGAAAGGCTTTCGAGAGTGTCCCATTTGTAGAAAAATCTCACTGATTGCAGATCCTCCTTGCAATCTTGCTCTGAAGAACCTCTGTGAAGCTTTCCTGAAAGAGCGAAGCCAGAGATCTTCACAGGGTCCTGAGATCCGCTGTAACCTCCACAATGAGCTGCTGAAGCTCTTCTGCCTGGTTGACCAACAGCCGATTTGTGTGGTGTGCCGGGACTCTAACAAGCATCAGACTCACAGCTGTCGCACAGCTGATGAAGCAGCAGTTGATCTCAAGGAGGAGCTCAGGCGTAAACTGAAGCCTCTACTGGAGAAGTTAAAAGTATTTGAAGattttctgcaaaaatgcaCTGAAACAGCAGAACACACAAAGTTTCAGGCAGAGAAGACGGAGAAGGAGATTAAGGAGGACTTTTCAAAGCTTCATCAGTTTCTACAACAAGAAGAAGCAGCCAGGATAGCAGTGCTGAGGGCAGAAAATGAGCAGAAAGGGCAGATGTTAAAGAAAAAGATTGAGGAGATGAACAGAGAGATACTGTGCCTTACAGCAACCATTAGATCTGTTACTGAGCAGATCCAAGCAGACCACATCTCATTCCTACAGAGGTACAAAGCCACTCTGAAAAGaacgcAGTGTAACCTGAAGGATCCTGAGACCCTCTCTGGAGCTCTGATTGATGTGGCAAAGCACCTGGGCAACCTGAAGTTCAGAGTGTGGGAGAAGATGAAGGATAtggttaaatacaATCCTGTGACTATGGACCCCAACACAGCACACTCCAGTCTCTACGTGTCTCATGATTTGAGCAGCATGCGTCTGAATTCTGTCCAACAGGCCTGTCCTGCCAACCCAGAGAGATTCAGCTTCTACCAGGTCCTGCTGAGCTCTGAGGTCTTTGGGCCAGGGTGTCATTACTGGGATGTAGAGGTGGGAAAGTGTGAAGAGTGGGCTTTAGGAGTGTGTACAGAGTCTGCCCACAGAGGAGAGAGGTTCCTGGAGAGCGGTGTGTGGCGTGTTTGGTATTGCTCTGGAGTGTACCGGGCTGACTCGCCTGAAAAGCGCTACGTCACCCTTAGAGTGAAGCAGAGGATCCAGAGGGTCAGAGTGCTTCTGGACTGGAGTGGAGGACAGCTCTTATTCATCGACCCTTTGACTAACAAACAACTACACAGCTTCACGCACAGCTTCACTGAGAGAGTCTACGCCACCTTTGCAAATGGTAGTTCCAGCCATTTTTTGAGAATCCTGCCATTGAGGGCTTGTTTAATCCTGAAGGACAGCAGTACAGTGTAAAGCTAAAGATAAACTTGAGTTTGGCTTTGTGTGCAGGTAGACAACTGGCTGCTTTGTGAGAATAACTGCTCACTTTATAGTGCACGAGTGGAGAGGCTTCCAATTGCCGCAACAGCAAAGACAGATTAGAAAGATGCGAGTAGgcatttttctgcttttgtttattgttaatttcTGAGGATTCGCACAATATCTCTAGCCTAAATATATCTGAAACAAATTAGGGGTAAATGGTTATGAATAGGGCTGAGTATTGACAAGAACTTGTCATTgatccaaagttttttttattattattatatacagccctggaaaaaattaagagaccacttcagttcctgaatcagttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212966 lncRNA upstream 136999 8680809 ~ 8683103 (+) True G157069
TU212961 lncRNA upstream 212081 8603589 ~ 8608021 (+) True G157064
TU212947 lncRNA upstream 251639 8568244 ~ 8568463 (+) True G157054
TU212945 lncRNA upstream 252434 8566429 ~ 8567668 (+) True G157052
TU212918 lncRNA upstream 381833 8432614 ~ 8438269 (+) True G157027
TU213140 lncRNA downstream 65632 8892090 ~ 8894941 (+) True G157210
TU213183 lncRNA downstream 122367 8948825 ~ 8949097 (+) True G157224
TU213185 lncRNA downstream 139713 8966171 ~ 8966371 (+) True G157226
TU213278 lncRNA downstream 517373 9343831 ~ 9344700 (+) True G157305
TU213285 lncRNA downstream 566844 9393302 ~ 9393516 (+) True G157311
XM_007233833.3 mRNA upstream 254604 8555188 ~ 8565498 (+) True prpf18
XM_007233834.3 mRNA upstream 254604 8555188 ~ 8565498 (+) False prpf18
XM_007233844.3 mRNA upstream 286935 8520018 ~ 8533167 (+) True cpt1b
XM_022679553.1 mRNA upstream 306671 8508404 ~ 8513431 (+) True LOC103026556
XM_015601452.2 mRNA upstream 306671 8509135 ~ 8513431 (+) False LOC103026556
XM_022679407.1 mRNA downstream 4971 8831429 ~ 8836613 (+) True LOC103043520
XM_007250928.3 mRNA downstream 18518 8844976 ~ 8871398 (+) False LOC103030146
XM_007250927.3 mRNA downstream 18519 8844977 ~ 8871398 (+) False LOC103030146
XM_007250929.3 mRNA downstream 21100 8847558 ~ 8871398 (+) True LOC103030146
XM_007250930.3 mRNA downstream 21100 8847558 ~ 8871398 (+) False LOC103030146
TU212948 other upstream 249225 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 1213434 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 1388534 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 1415546 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 3662702 5157154 ~ 5157400 (+) True G156188
TU213377 other downstream 1114371 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 3535993 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 3909174 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 4907487 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 6223764 15050222 ~ 15050718 (+) True G158369

Expression Profile