RNA id: XM_022679595.1


Basic Information

Item Value
RNA id XM_022679595.1
length 2373
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC103040136
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 10917452 ~ 10924422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTCTCGAAATCGAGAATAAACAGACCAGCTGAGAGTCAGGAAGTTTAAATACCAGCAGACAGCAGAAGCTTCATTTAACCAGCTCGGGTTTAACATGGCGAAGATCGTGTCTAACCGTATAATGCAGCTGCTGTGTGATAACATGGGCTGTCTGGAGCTGGGGCAGGTGGACAGCGTGCTGAAGAAGAGCTACACGGTGGATGAAGGTCTGCTGAAGAGGCTGCTGTCTGACCGCAGCAGTTTTGAGATGGTGGAGCAGAGCACCGGGCCGCTGCTGGTGTCCAGGACTGACCTGCGAGTCTGCTGCAAACAGGGCGACGACTGCCAGGACTGCGGCCAGCTGCACATCTGCAGGTATCTGGTGTGTGGAAAGTGCAAATTTGGGTTTAAGTGCAAGAATTCACATGACATAAAATCTCAGCATAATTCTGCACTCCTGGCATTAAAAAATCTCAGTAACCTTGAAGAAGCTCAGCTGTTCCAACTGTTGCTGCAGAATGACCCAACTCTTCTTCCAGAGCACTTCCTGCAGGATGACTGTAAATTTGGAGCTGCTTGTAAACGGGCTCATTCCTTTGATGCCGCCGCCATGAAAATCCTGAATGCCAGAGGACTCAGCCCCGAAAACCTTCGCAACCTTCACAAAATATACAAGAACAGATTTCTCCTGGCTGGGAATGATGAGAAACATGCAGCCAAACCAGTGGAGAAAGGCAAACAGACGAGCAGGCAGCACTCCAGTAACTCTGTGAGTGAGGCCGACCGCAGTGAAATCTGTCTGTACTTTGTTCGTCAGGGATGCAGTTTTAAAGGGAAATGTGTCCGTGTTCATCATGATCGACCTTATAAATGGGAGGTTTTAGCCCAGGACGGAGTGACATGGACACACATGCCTAATGAAGAGGATATTGAGCGAGCCTACTGTAACCCAGCTAATGAGAAGAGCTCTGGACCTCAGCCAGTGAACTTTTCCTCAATGACGTGTGGAGGAGCTTCAGTACGTCGACTTTCTACAGCATCGTCCGTTACCAAACCTCCTCACTTCATCCTGACCACTGAGTGGCTATGGTACTGGGAGGATGAAAAAGGACAATGGAATGAATATGGTCATGGGGACGATGGAAAAAATGTGTCCTCAGTGTCCTCGAAAGTGTTGGAGAATTTGTTTCTCGCTGAAGTTGAAACTGAACTCACCTTCAGCGTGGGTAATCAAAACTATGTGCTCAACCTGAAAGATATGTGTCAGCAAAACATAAAGTACAAGACAAAAAGAAAGGTTCGAAGGAGGCCGCAATTCGTTTCAGCTCAAGACGTGAAGGGCAAATTGAAAAGTGACACCCAGGaaagctccagctcctcctctgtGGAAGTTCCTGCACACTGGGACAAAGGGACCCCAACTGATCACTCCTACAAGattgttcCTCTGTTAAAGTCTGCGACTGATTACAAAACAGTAGAAATGCTGTTTAAGCGGACAATGTACACAAGCACCATCCACAGCATCAGGAGAGTGCAGAATCCATCTCTCTGGAGAGTCTTTCAGTGGCAGAAAGAGCAGATGAAGGAGAGGAATGGCGGGAAGGATGTGGATGAACGTTACCTGTTCCATGGTACAGATCAGCATTTAATAGATGCCATCTGTGATCAGAACTTCGACTGGAGGGTCTGTGGTGTTCATGGGACACTTTATGGGAAAGGAAGCTATTTTGCCAGAGATGCCAAGTATTCAGATAAATACGCTAAATCCAGTGGCAGGACCAAGATGATGTTTGTGGCTCTCGTCCTTGTTGGCGAATTAACCAGAGGCAAAACAACCTACCTACGACCCCCACAGAAGAATGGCGGGCGGGGCTTTTACGATAGCTGTGTGGACAACGAATCCAACCCAGCTATTTTTGTCATCTTTGAGAAGTATCAGATCTATCCTGAGTACATTATTGAGTACTCTTAGTCCAGTAGTGTACTCTTAAGAAATGATGGCATTCTCACaattaaaaaatgagttttacataaaaacttattttttgtaGAGGGATCTGATCAGaaatctctataaaaaaaaaaaaaaaactaaactaaataaaacaaaacaaacaaaaacaaaacaaagcatgCAGCCTTACCTGATAATGCACTTTTTTCTCTAATCTTTTGGGGATTTGCTATGACAACTATGAGAATTTAAATCAActctttttgtttaaatgttaaactaGAAACCAGATAGCAGATTTTAACTAGGTTGTCCAGTACTGGGTTTTGTTGTAACCTATAGTGAGTTATTGAAGATGCAATGCTTAATCACCTTTCCTACTGTGTGAAttttaaactctgaaataaTGATTAAACTTCATTAAACATCTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213593 lncRNA upstream 34984 10881730 ~ 10882468 (+) True G157546
TU213587 lncRNA upstream 160790 10755079 ~ 10756662 (+) True G157540
TU213586 lncRNA upstream 163069 10751729 ~ 10754383 (+) False LOC103038570
TU213553 lncRNA upstream 203479 10700788 ~ 10713973 (+) False klhl36
TU213566 lncRNA upstream 217080 10700157 ~ 10700372 (+) True G157523
TU213612 lncRNA downstream 93993 11018415 ~ 11018813 (+) True G157557
TU213619 lncRNA downstream 207944 11132366 ~ 11143469 (+) False hipk2
TU213791 lncRNA downstream 385593 11310015 ~ 11314603 (+) True G157703
TU213866 lncRNA downstream 543504 11467926 ~ 11468139 (+) True G157761
TU213869 lncRNA downstream 563638 11488060 ~ 11489560 (+) True G157764
XM_022679593.1 mRNA upstream 4485 10902953 ~ 10912967 (+) True LOC103045650
XM_022679590.1 mRNA upstream 15893 10766016 ~ 10901559 (+) True srgap1
XM_022679591.1 mRNA upstream 15893 10766017 ~ 10901559 (+) False srgap1
XM_022679592.1 mRNA upstream 18974 10766015 ~ 10898478 (+) False srgap1
XM_007250958.3 mRNA upstream 153342 10758240 ~ 10764110 (+) True tmem5
XM_007250960.3 mRNA downstream 106643 11031065 ~ 11143471 (+) True hipk2
XM_007250961.3 mRNA downstream 106643 11031065 ~ 11137978 (+) False hipk2
XM_022679598.1 mRNA downstream 221740 11146162 ~ 11206745 (+) True LOC103046273
XM_022679597.1 mRNA downstream 221740 11146162 ~ 11206745 (+) False LOC103046273
XM_022679600.1 mRNA downstream 221740 11146162 ~ 11206745 (+) False LOC103046273
TU213377 other upstream 975647 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 2346575 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 3310784 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 3485884 7372376 ~ 7431568 (+) False LOC111194759
TU213920 other downstream 1438029 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 1811210 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 2809523 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 4125800 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 4203946 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile