RNA id: XM_022679613.1


Basic Information

Item Value
RNA id XM_022679613.1
length 2513
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC103046882
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11450922 ~ 11461645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGCTTAAGTCAGCTGCTCTTTAGCTCTGCTGAATTGAGTTCACATGATCAGCTGATAGGTCCCATTGCATTTACAATCaacttcagcagcagcagcagcagccttcatcgcctctctctctctctctctctctctctctctctctccctctgtaacGTATCTCCTCAAAGGTCCCCTGTCTTCCTTCACACTGCTTCTGCTGTACTTCCTTGGTCTCTTTTCATCCTGTCTTACAAGGTCTATCTGTGAAACTGTGCAGTGTTCTGTGTTCTTCACTTTAAGGACCTACAGAACTACTCATGACTTCAGAAAAGGAGAGCAATGGGATGGACAACTATTCGTTTCCTGTTGACGGTGTGGTAAATCGTTTCTGTGCGCTGCCTGAGGAACAGGATGCAGATTCAACAGAAGAAGACAGCAGGAATAAACTGGCTTATTGTGTAACAGATGTACCACCATGGTACCTGTGCATTATCCTGGGCATTCAGcACTTCCTGACTGCGTTTGGTGGAATCATTGCCATCCCGCTGATCCTGTCTCAAGGACTGTGTCTACAGCATGATGGACTCACTCAGAGTCACCTGATCAGCACCATCTTCTTTGTTTCAGGGTTGTGCACCTTGTTGCAGGTCACTCTGGGTGTCAGGTTGCCTATTCTTCAAGGTGGAACATTTACTCTTCTTGCACCATCAATGGCCTTGCTTTCCATGCCAGAATGGACCTGTCCAGCATGGACACAGAATGCCACCCTGGTCAACACATCTTCCCCTGAGTTCATCCATGTCTGGCAGAGTCGCATGCAGGTGCTTCAGGGTTCCATCATGGTGGGCTCCCTGTTCCAGGTACTGGTGGGATTCTCTGGCCTCATTGGTCTCTTCATGCATTTTATCGGCCCTCTGACCATCGCACCAACCATCTCCCTTATTGGCCTGTCTCTGTTCGACTCTGCTGGAATGAATGCAGGAAACCACTGGGGAATTTCAGCCATGACGACATGCCTGATTGTACTGTTCTCACAGTATCTCCGTCACATTGCAATACCTGTACCCACATACAGCAAGGCCAAGAAATTCCACACATCCAGGATGTATATCTTCCAGATCCTTCCTGTGCTCCTGGGAATTACGGTCTCCTGGCTCATCTGCTATCTTTTCACTATTTATGATGTCCTACCCTCTGACTCTGACCAATATGGCTACCTAGCTCGCACTGACATTAAAGGGGATGTGATTGGAGGTGCACCCTGGTTTAGGTTTCCATATCCAGGGCAGTGGGGCATGCCTACTGTGAGCTTGGCAGGTGTGCTGGGTATCCTGGCCGGGATCATATCCTCAATGATAGAGTCAGTGGGTGATTACCATGCCTGTGCTAGGTTATCTGGTGCTCCACCTCCACCCAAGCATGCCATCAACAGGGGGATTGGCATTGAGGGCATAGGCTGTCTTCTGGCAGGGGCCTGGGGAACGGGCAACGGGACCACCTCCTACAGTGAGAATGTAGGGGCGCTAGGAATAACTAAGGTTGGCAGCCGAATGGTGATTGTTGGCAGTGGCGTCATCATGATCATTATGGGAGTGTTTGGAAAAATTGGAGCAATTTTTACCACCATCCCAACACCTGTTATTGGTGGAATGTTCCTAGTGATGTTTGGGGTCATATCTGCAGCTGGAGTCTCCAATCTACAGTATGCAGATATGAACTCATCTCGTAACATCTTCATCTTCGGCTTCTCGATGTTTACTGGACTTGCCATCCCAAACTGGATAATGAAAAACCCAGCTGTCATTGCAACAGGTATTGTTGAGCTGGATCAGGTTCTTCAGGTTCTTCTGACAACCAGCATGTTTGTGGGAGGGTTCTTTGGATTCATGCTTGATAACACCATCCCCGGGACAAAACGTGAGCGAGGCATAACTGCGTGGAACAGAGCCCACGAAGATGATTCTGACAGCACACAGGAGAGTGATGAGGTTTATGGGCTTCCCTGTGGCATCACCTCATATCTCTCCTCCTGTTTTTGGATCAAATATGTGCCTTTCTGCCCATCACATAAAACCAGGCCACAAAATATCACCGCCAGCAGCTCGAGCTCACTGGAGAAGAAGGAGCCTAGCAAAAATGACACACACATCATAGTAGCAGTGGCACTATAATCATACAGGAGGACAACATCTGTTGTGGTCAATGCAGTTTGGGCTGGAACCCTCCACTTCACATAATACCTACTGTAATCTACCCGTGCTGTGAAgactgagaaaaaacaaaacaaaactaaactaaatgctCTGAACTCTCTAAAGACCAGAGGCAGCTGTATGGGGGTTCCACGTGTCTTTTATGGACCCATTGTTTTCTGATATTTCTTTTATAACAAAATATGGTATGAATGTGAATTGAAGATATGAATGTGTAGttgaagtatgtgtgtgtatgtatgtaagtataTATTCCTTTTTATTTCCTACATGTTTTGCATTTGTGGCActtaaataaaggaaaacatgTCTATGTA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213791 lncRNA upstream 136319 11310015 ~ 11314603 (+) True G157703
TU213619 lncRNA upstream 307453 11132366 ~ 11143469 (+) False hipk2
TU213612 lncRNA upstream 432109 11018415 ~ 11018813 (+) True G157557
TU213593 lncRNA upstream 568454 10881730 ~ 10882468 (+) True G157546
TU213587 lncRNA upstream 694260 10755079 ~ 10756662 (+) True G157540
TU213866 lncRNA downstream 6281 11467926 ~ 11468139 (+) True G157761
TU213869 lncRNA downstream 26415 11488060 ~ 11489560 (+) True G157764
TU213871 lncRNA downstream 30594 11492239 ~ 11492486 (+) True G157766
XR_002651240.1 lncRNA downstream 31970 11493615 ~ 11501536 (+) False LOC111194766
XR_002651239.1 lncRNA downstream 32766 11494411 ~ 11501536 (+) True LOC111194766
XM_022679602.1 mRNA upstream 157249 11269015 ~ 11293673 (+) True nup205
XM_007250962.3 mRNA upstream 184602 11231961 ~ 11266320 (+) True fam107b
XM_022679601.1 mRNA upstream 184602 11245824 ~ 11266320 (+) False fam107b
XM_007250963.3 mRNA upstream 184602 11255575 ~ 11266320 (+) False fam107b
XM_022679600.1 mRNA upstream 244177 11146162 ~ 11206745 (+) False LOC103046273
XM_022679616.1 mRNA downstream 569491 12031136 ~ 12333915 (+) False LOC103032257
XM_022679617.1 mRNA downstream 569943 12031588 ~ 12333915 (+) False LOC103032257
XM_007250499.3 mRNA downstream 758272 12219917 ~ 12333915 (+) True LOC103032257
XM_007250498.3 mRNA downstream 878361 12340006 ~ 12362527 (+) True LOC103031933
XM_007250504.3 mRNA downstream 1053817 12515462 ~ 12524112 (+) True utp4
TU213377 other upstream 1509117 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 2880045 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 3844254 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 4019354 7372376 ~ 7431568 (+) False LOC111194759
TU213920 other downstream 900806 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 1273987 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 2272300 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 3588577 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 3666723 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile